• 👋 Hi, I’m Markus !
• 👀 I’m interested in Integrative Bioinformatics, particular everything about (sc|sp)RNA-seq !
• 🌱 I’m currently learning explainable AI tools for my data!
• 💞️ I’m looking to collaborate on interesting projects! Just reach out!
• 📫 Contact me here, or via mail. Contact detailshere:https://ibio.dev

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1. FlowSetsFlowSetsPublic

   Analyse high-dimensional data in a longitudinal fashion and find similarly regulated sets of genes

   Jupyter Notebook 1

2. sequ-intosequ-intoPublic

   Forked fromigemsoftware2018/igem_munich_2018

   Third generation sequencing techniques rapidly evolved as a common practice in molecular biology. Great advances have been made in terms of feasibility, cost, throughput, and read-length. However, …

   TypeScript 3 1

3. PLOSCPLOSCPublic

   Plots and Scripts for scRNA-seq analysis

   HTML

4. bioGUIbioGUIPublic

   bioGUI provides install modules for bioinformatic software for users and allows developers to script a GUI for their applications.

   C 18 3

5. pIMZpIMZPublic

   This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/

   Jupyter Notebook 6

6. poreSTATporeSTATPublic

   poreSTAT: a python framework for working with fast5 third generation sequencing data

   JavaScript