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1. motifgpmotifgpPublic

   Motif discovery for DNA sequences using multiobjective optimization and genetic programming.

   Python 6

2. PavlidisLab/aspiredbPavlidisLab/aspiredbPublic

   ASPIREdb is a web-based software system for the analysis of genomic variants (CNVs, SNVs, and Indels) and phenotypes. Potential users include researchers who are trying to understand the relationsh…

   JavaScript 4

3. moea-automatic-terminationmoea-automatic-terminationPublic

   Implementation of the MOEA Entropy based automatic termination algorithm (Saxena et al. 2016)

   Python 2 1

4. PavlidisLab/rnaseq-pipelinePavlidisLab/rnaseq-pipelinePublic

   RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

   Shell 22 4

5. moead-pymoead-pyPublic

   A Python implementation of the decomposition based multi-objective evolutionary algorithm (MOEA/D)

   Python 78 29

6. PavlidisLab/RSEMPavlidisLab/RSEMPublic

   Forked fromdeweylab/RSEM

   RSEM with STAR shared memory support (fork from RSEM: accurate quantification of gene and isoform expression from RNA-Seq data)

   C++ 1