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1. mikadomikadoPublic

   Forked fromEI-CoreBioinformatics/mikado

   Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data and to select the best models in each locus.

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2. oracle_traineroracle_trainerPublic

   Scripts to automate the training of Augustus, TwinScan, GeneID and SNAP.

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3. CPC2CPC2Public

   Mirror of the CPC2 code.

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4. pydata-bookpydata-bookPublic

   Forked fromwesm/pydata-book

   Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

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5. ei-liftoverei-liftoverPublic

   Repository to transfer gene models across (sub)genomes and check their coherence.

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6. RagTagRagTagPublic

   Forked frommalonge/RagTag

   Fast reference-guided genome assembly scaffolding

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