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@lowe-lab-ucl

CellX // Lowe lab UCL

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  1. arboretumarboretumPublic

    Track and lineage visualization with btrack and Napari 🌲

    Python 45 11

  2. cellx-predictcellx-predictPublic

    Explainable AI model of cell behavior

    Python 20 10

  3. trajectoryflowtrajectoryflowPublic

    Python 6 1

  4. unet_segmentation_metricsunet_segmentation_metricsPublic

    Metrics for determining segmentation accuracy

    Jupyter Notebook 38 10

  5. octopuslite-readeroctopuslite-readerPublic

    reader for octopuslite data

    Python 2 2

  6. segment-classify-tracksegment-classify-trackPublic

    Full processing piepline for cell tracking

    Jupyter Notebook 1 1

Repositories

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Showing 10 of 19 repositories
  • arboretum Public

    Track and lineage visualization with btrack and Napari 🌲

    lowe-lab-ucl/arboretum’s past year of commit activity
    Python 45MIT 11 15 0 UpdatedOct 25, 2024
  • CELL0027 Public

    Computational Cell Biophysics

    lowe-lab-ucl/CELL0027’s past year of commit activity
    Jupyter Notebook0MIT0 0 0 UpdatedMar 6, 2024
  • staged-recipes Public Forked fromconda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    lowe-lab-ucl/staged-recipes’s past year of commit activity
    Python0BSD-3-Clause 5,188 0 0 UpdatedNov 21, 2023
  • unet_segmentation_metrics Public

    Metrics for determining segmentation accuracy

    lowe-lab-ucl/unet_segmentation_metrics’s past year of commit activity
    Jupyter Notebook 38MIT 10 1 0 UpdatedNov 21, 2023
  • ctc-tools Public

    CTC tools

    lowe-lab-ucl/ctc-tools’s past year of commit activity
    Python0MIT0 0 0 UpdatedNov 16, 2023
  • lowe-lab-ucl/btrack-examples’s past year of commit activity
    Shell0MIT0 0 0 UpdatedAug 8, 2023
  • cellx-predict Public

    Explainable AI model of cell behavior

    lowe-lab-ucl/cellx-predict’s past year of commit activity
    Python 20BSD-3-Clause 10 8 3 UpdatedApr 4, 2023
  • octopuslite-reader Public

    reader for octopuslite data

    lowe-lab-ucl/octopuslite-reader’s past year of commit activity
    Python 2BSD-3-Clause 2 3 0 UpdatedMar 23, 2023
  • napari-btrack Public archive

    Napari plugin for btrack

    lowe-lab-ucl/napari-btrack’s past year of commit activity
    Python 1BSD-3-Clause 3 0 0 UpdatedMar 22, 2023
  • napari-btrack-reader Public archive

    Napari plugin to load btrack files

    lowe-lab-ucl/napari-btrack-reader’s past year of commit activity
    Python 1BSD-3-Clause 1 0 0 UpdatedMar 3, 2023

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