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1. minimap2minimap2Public

   A versatile pairwise aligner for genomic and spliced nucleotide sequences

   C 1.9k 428

2. bwabwaPublic

   Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

   C 1.6k 555

3. minigraphminigraphPublic

   Sequence-to-graph mapper and graph generator

   C 438 38

4. miniprotminiprotPublic

   Align proteins to genomes with splicing and frameshift

   C 354 19

5. pangenepangenePublic

   Constructing a pangenome gene graph

   C 183 10

6. ropebwt3ropebwt3Public

   BWT construction and search

   C 111 3