Department of Microbiome Science at the MPI for Biology

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Struo2Struo2Public
Scalable creating/updating of metagenome profiling databases
Jupyter Notebook 60 8
StruoStruoPublic
Ley Lab MetaGenome Profiler DataBase generator
Jupyter Notebook 49 4
SynTrackerSynTrackerPublic
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
Python 27 7
DeepMAsEDDeepMAsEDPublic
Deep learning for Metagenome Assembly Error Detection
Jupyter Notebook 26 6
pyTecanFluentpyTecanFluentPublic
Python interface to TECAN Fluent liquid handling robot
Python 19 2
endoRendoRPublic
Code and manual of the endoR R-package (Ruaud et al, in preparation).
Jupyter Notebook 12

Repositories

Showing 10 of 49 repositories

uHEAT Public
R code for analysis presented in the uHEAT manuscript
leylabmpi/uHEAT’s past year of commit activity
R00 0 0 UpdatedFeb 19, 2025
SynTrackerVis Public
SynTrackerVis: a Python-based web application for interactive visual analysis of SynTracker's results
leylabmpi/SynTrackerVis’s past year of commit activity
Python00 0 0 UpdatedFeb 13, 2025
SynTracker Public
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
leylabmpi/SynTracker’s past year of commit activity
Python 27 7 0 7 UpdatedFeb 3, 2025
LeyLabRMisc Public
R package of Ley Lab misc functions, rmd templates, etc.
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Jupyter Notebook 1GPL-3.0 2 0 1 UpdatedAug 20, 2024
qiime_2_ll_quick_viewer Public
leylabmpi/qiime_2_ll_quick_viewer’s past year of commit activity
Python 3MIT 2 0 14 UpdatedAug 13, 2024
ll_pipeline_utils Public
Utility scripts for running Ley Lab pipelines
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Python 10 0 0 UpdatedJun 12, 2024
resmico Public
Identifying misassemblies via deep learning
leylabmpi/resmico’s past year of commit activity
Jupyter Notebook 11MIT 1 8 0 UpdatedMay 1, 2024
Synteny_analyses Public
leylabmpi/Synteny_analyses’s past year of commit activity
R00 0 0 UpdatedApr 22, 2024
pyTecanFluent Public
Python interface to TECAN Fluent liquid handling robot
leylabmpi/pyTecanFluent’s past year of commit activity
Python 19MIT 2 0 0 UpdatedApr 18, 2024
Schoen_Christensenella_2023 Public
leylabmpi/Schoen_Christensenella_2023’s past year of commit activity
HTML00 0 0 UpdatedNov 11, 2023