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Tools for biomonitoring and bioassessment; metric calculation for benthic macroinvertebrates, fish, and periphyton.
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leppott/BioMonTools
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#> Last Update: 2025-09-10 08:52:11.772796Functions to aid the data analysis of bioassessment and biomonitoringdata. Suite of functions and tools for metric calculation and scoringfor mult-metric indices and related data manipulation.
To install from CRAN use the code below.
install.packages("BioMonTools")To install the most current version on GitHub use the code below. Theuse of “force = TRUE” ensures the package is installed even if alreadypresent. If the packageremotes is missing the code below will installit.
if(!require(remotes)){install.packages("remotes")}#install if neededinstall_github("leppott/BioMonTools",force=TRUE)
Vignettes are not installed by default. If you want the additionaldocumentation (recommended) then use this version of the code.
if(!require(remotes)){install.packages("remotes")}#install if neededinstall_github("leppott/BioMonTools",force=TRUE,build_vignettes=TRUE)
If having issues with install (e.g., ‘cannot open URL’) it could be alatency issue with GitHub.
Use the code below before retrying the above install commands.
options(timeout=400)
In development.
By those using involved with bioassessment and biomonitoring and theneed for data manipulation.
A common set of tools will standardize outputs across entities. Nolonger need to use the same database or spreadsheet. Only need to formatdata for use with these tools.
Vignette and install guide updates are planned for the future.
https://github.com/leppott/BioMonTools/issues
Fixes (if any).
New metrics (add needed).
New index scoring (as needed).
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Tools for biomonitoring and bioassessment; metric calculation for benthic macroinvertebrates, fish, and periphyton.
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