Movatterモバイル変換

[0]ホーム
URL:

Skip to content

Navigation Menu

Sign in
Appearance settings

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly

 Sign up
Appearance settings

Commit5836a58

Browse files
committed
Fix CRAN checks
1 parent95a7fc9 commit5836a58

File tree

9 files changed

+597
-8
lines changed

9 files changed

+597
-8
lines changed

‎R/condextr.R‎

Lines changed: 573 additions & 0 deletions
Large diffs are not rendered by default.

‎R/datasets.R‎

Lines changed: 8 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -144,7 +144,11 @@ NULL
144144
#'
145145
#' Interview component of survey 'What we eat in
146146
#' America'. These are extracted from the 2015–2016 National Health and Nutrition Examination Survey (NHANES, \url{https://wwwn.cdc.gov/nchs/nhanes/Default.aspx}) report and consist of the total nutrients for all food and beverage intake ingested over a 24 hours period.
147+
<<<<<<<HEAD
147148
#' @source National Center for Health Statistics, now available from the Wayback Machine via \url{https://web.archive.org/web/20201029113801/https://wwwn.cdc.gov/Nchs/Nhanes/2015-2016/DR1TOT_I.XPT}
149+
=======
150+
#' @source National Center for Health Statistics, \url{https://web.archive.org/web/20201020150740/https://wwwn.cdc.gov/Nchs/Nhanes/2015-2016/DR1TOT_I.XPT}
151+
>>>>>>> f7be225 (FixCRANdevel)
148152
#'
149153
#' @details Note that the sample design oversampled specific population targets and that only respondants are provided. The website contains more information about sampling weights. There are multiple missing records.
150154
#' @format A data frame with 9544 rows and 38 variables:
@@ -189,7 +193,11 @@ NULL
189193
#' \item{\code{sele}}{selenium (in micrograms)}
190194
#'}
191195
#' @name nutrients
196+
<<<<<<<HEAD
192197
#' @note These data are subject to a data user agreement, available at \url{https://www.cdc.gov/nchs/policy/data-user-agreement.html}
198+
=======
199+
#' @note These data are subject to a data user agreement, see \url{https://www.cdc.gov/nchs/policy/data-user-agreement.html}
200+
>>>>>>> f7be225 (FixCRANdevel)
193201
"nutrients"
194202

195203

‎R/pickands.R‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
22
#'
33
#' Restricting to the largest fourth of the data, returns the number of exceedances that minimizes the Kolmogorov-Smirnov statistic, i.e., the maximum absolute difference between the estimated generalized Pareto and the empirical distribution of exceedances. Relative to the paper, different estimation methods are proposed.
44
#'
5-
#' @references James Pickands III (1975). \emph{Statistical inference using extreme order statistics}, Annals of Statistics, 3(\bold{1}) 119-131, \url{https://doi.org/10.1214/aos/1176343003}
5+
#' @references James Pickands III (1975). \emph{Statistical inference using extreme order statistics}, Annals of Statistics, 3(\bold{1}) 119-131, \doi{10.1214/aos/1176343003}
66
#' @param xdat [numeric] vector of observations
77
#' @param method [string] estimation method, either the quartiles of Pickands (1975), maximum likelihood, probability weighted moments or L-moments
88
#' @return a vector with elements \code{k}, the number of order statistics to keep, and \code{thresh}, the numerical value of the latter
@@ -113,7 +113,7 @@ print.mev_thselect_pickands <- function(
113113
#' @param thresh [numeric] vector of candidate thresholds. If missing, 20 sample quantiles starting at the 0.25 quantile in increments of 3.75 percent.
114114
#' @param plot [logical] if \code{TRUE}, return a plot of the sample L-kurtosis against the L-skewness, along with the theoretical generalized Pareto curve.
115115
#' @return scalar for the chosen numeric threshold
116-
#' @references Silva Lomba, J., Fraga Alves, M.I. (2020). \emph{L-moments for automatic threshold selection in extreme value analysis}. Stoch Environ Res Risk Assess, 34, 465–491. \url{https://doi.org/10.1007/s00477-020-01789-x}
116+
#' @references Silva Lomba, J., Fraga Alves, M.I. (2020). \emph{L-moments for automatic threshold selection in extreme value analysis}. Stoch Environ Res Risk Assess, 34, 465–491. \doi{10.1007/s00477-020-01789-x}
117117
#' @export
118118
thselect.alrs<-function(xdat,thresh,plot=FALSE) {
119119
xdat<- as.numeric(xdat[is.finite(xdat)])

‎R/thselect.R‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -4,7 +4,7 @@
44
#' of Schneider et al. (2021) for threshold selection.
55
#' The implementation uses a second-order regular variation index of -1
66
#'
7-
#' @references Schneider, L.F., Krajina, A. & Krivobokova, T. (2021). \emph{Threshold selection in univariate extreme value analysis}, Extremes, \bold{24}, 881–913 \url{https://doi.org/10.1007/s10687-021-00405-7}
7+
#' @references Schneider, L.F., Krajina, A. & Krivobokova, T. (2021). \emph{Threshold selection in univariate extreme value analysis}, Extremes, \bold{24}, 881–913 \doi{10.1007/s10687-021-00405-7}
88
#' @param xdat vector of positive exceedances
99
#' @return a list with elements
1010
#' \describe{
@@ -95,7 +95,7 @@ print.mev_thselect_samsee <- function(
9595
#' Minimum distance threshold selection procedure
9696
#'
9797
#'
98-
#' @references Clauset, A., Shalizi, C.R. and Newman, M.E.J. (2009). \emph{Power-Law Distributions in Empirical Data}. SIAM Review. Society for Industrial and Applied Mathematics, \bold{51}, 661-703, \url{https://doi.org/10.1137/070710111}
98+
#' @references Clauset, A., Shalizi, C.R. and Newman, M.E.J. (2009). \emph{Power-Law Distributions in Empirical Data}. SIAM Review. Society for Industrial and Applied Mathematics, \bold{51}, 661-703, \doi{10.1137/070710111}
9999
#' @param xdat vector of positive exceedances
100100
#' @return a list with components
101101
#' \describe{

‎man/nutrients.Rd‎

Lines changed: 8 additions & 0 deletions
Some generated files are not rendered by default. Learn more aboutcustomizing how changed files appear on GitHub.

‎man/thselect.alrs.Rd‎

Lines changed: 1 addition & 1 deletion
Some generated files are not rendered by default. Learn more aboutcustomizing how changed files appear on GitHub.

‎man/thselect.mdps.Rd‎

Lines changed: 1 addition & 1 deletion
Some generated files are not rendered by default. Learn more aboutcustomizing how changed files appear on GitHub.

‎man/thselect.pickands.Rd‎

Lines changed: 1 addition & 1 deletion
Some generated files are not rendered by default. Learn more aboutcustomizing how changed files appear on GitHub.

‎man/thselect.samsee.Rd‎

Lines changed: 1 addition & 1 deletion
Some generated files are not rendered by default. Learn more aboutcustomizing how changed files appear on GitHub.

0 commit comments

Comments
 (0)
[8]ページ先頭
©2009-2025 Movatter.jp