Metagenomic binning based on Hi-C data

Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction

Simple library/pipeline to generate and handle Hi-C data.

Large genome reassembly based on Hi-C data, continuation of GRAAL

HiContacts: R interface to cool files and analysis of Hi-C contacts

Codes used to perform analyses in the Chromosight publication

In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.

Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)

Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)