Steffen Klamt's Lab at the Max Planck Institute Magdeburg

Software developed by members of the ARB group of Steffen Klamt at the Max Planck Institute Magdeburg

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straindesignstraindesignPublic
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
Python 41 7
autopacmenautopacmenPublic
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
HTML 14 8
Kinetic-models-of-E.-coliKinetic-models-of-E.-coliPublic
Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.
3
CommModelPyCommModelPyPublic
Create stoichiometric metabolic network models of single-species or multi-species communities
Python 3
MEMOMEMOPublic
Models and scripts for the MEMO paper
MATLAB 1
astheriscPackageastheriscPackagePublic
Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models
MATLAB

Repositories

Showing 10 of 17 repositories

straindesign Public
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
klamt-lab/straindesign’s past year of commit activity
Python 41Apache-2.0 7 11 0 UpdatedMar 4, 2025
autopacmen Public
Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method
klamt-lab/autopacmen’s past year of commit activity
HTML 14Apache-2.0 8 5 0 UpdatedFeb 28, 2025
TCOSA Public
Thermodynamic Cofactor Swapping Analysis
klamt-lab/TCOSA’s past year of commit activity
Python 1Apache-2.00 0 0 UpdatedJan 24, 2025
GDP-Fucose_OptMet2023_Paper Public
Contains all relevant data of the 2023 GDP-Fucose paper.
klamt-lab/GDP-Fucose_OptMet2023_Paper’s past year of commit activity
Component Pascal 3Apache-2.00 0 0 UpdatedJun 28, 2024
OptMSP Public
klamt-lab/OptMSP’s past year of commit activity
Jupyter Notebook 3Apache-2.00 0 0 UpdatedJan 17, 2024
CNApy Public
The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here:https://github.com/cnapy-org/CNApy
klamt-lab/CNApy’s past year of commit activity
1Apache-2.00 0 0 UpdatedJul 15, 2022
astheriscPackage Public
Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models
klamt-lab/astheriscPackage’s past year of commit activity
MATLAB0Apache-2.00 0 0 UpdatedJun 1, 2022
CNAhelpers Public
A bunch of functions that come in handy when working with CNA
klamt-lab/CNAhelpers’s past year of commit activity
MATLAB 1Apache-2.0 1 0 0 UpdatedDec 3, 2021
Models_E.coli_High_ATP_Demand Public
Kinetic and stoichiometric model for the simulation of enforced ATPwasting in E.coli
klamt-lab/Models_E.coli_High_ATP_Demand’s past year of commit activity
Component Pascal 4Apache-2.00 0 0 UpdatedNov 23, 2021
Kinetic-models-of-E.-coli Public
Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.
klamt-lab/Kinetic-models-of-E.-coli’s past year of commit activity
30 0 0 UpdatedOct 8, 2021