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@klamt-lab

Steffen Klamt's Lab at the Max Planck Institute Magdeburg

Software developed by members of the ARB group of Steffen Klamt at the Max Planck Institute Magdeburg

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  1. straindesignstraindesignPublic

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    Python 41 7

  2. autopacmenautopacmenPublic

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    HTML 14 8

  3. Kinetic-models-of-E.-coliKinetic-models-of-E.-coliPublic

    Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

    3

  4. CommModelPyCommModelPyPublic

    Create stoichiometric metabolic network models of single-species or multi-species communities

    Python 3

  5. MEMOMEMOPublic

    Models and scripts for the MEMO paper

    MATLAB 1

  6. astheriscPackageastheriscPackagePublic

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    MATLAB

Repositories

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Showing 10 of 17 repositories
  • straindesign Public

    StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

    klamt-lab/straindesign’s past year of commit activity
    Python 41Apache-2.0 7 11 0 UpdatedMar 4, 2025
  • autopacmen Public

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    klamt-lab/autopacmen’s past year of commit activity
    HTML 14Apache-2.0 8 5 0 UpdatedFeb 28, 2025
  • TCOSA Public

    Thermodynamic Cofactor Swapping Analysis

    klamt-lab/TCOSA’s past year of commit activity
    Python 1Apache-2.00 0 0 UpdatedJan 24, 2025
  • GDP-Fucose_OptMet2023_Paper Public

    Contains all relevant data of the 2023 GDP-Fucose paper.

    klamt-lab/GDP-Fucose_OptMet2023_Paper’s past year of commit activity
    Component Pascal 3Apache-2.00 0 0 UpdatedJun 28, 2024
  • OptMSP Public
    klamt-lab/OptMSP’s past year of commit activity
    Jupyter Notebook 3Apache-2.00 0 0 UpdatedJan 17, 2024
  • CNApy Public

    The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here:https://github.com/cnapy-org/CNApy

    klamt-lab/CNApy’s past year of commit activity
    1Apache-2.00 0 0 UpdatedJul 15, 2022
  • astheriscPackage Public

    Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

    klamt-lab/astheriscPackage’s past year of commit activity
    MATLAB0Apache-2.00 0 0 UpdatedJun 1, 2022
  • CNAhelpers Public

    A bunch of functions that come in handy when working with CNA

    klamt-lab/CNAhelpers’s past year of commit activity
    MATLAB 1Apache-2.0 1 0 0 UpdatedDec 3, 2021
  • Models_E.coli_High_ATP_Demand Public

    Kinetic and stoichiometric model for the simulation of enforced ATPwasting in E.coli

    klamt-lab/Models_E.coli_High_ATP_Demand’s past year of commit activity
    Component Pascal 4Apache-2.00 0 0 UpdatedNov 23, 2021
  • Kinetic-models-of-E.-coli Public

    Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

    klamt-lab/Kinetic-models-of-E.-coli’s past year of commit activity
    30 0 0 UpdatedOct 8, 2021

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