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1. hogwashhogwashPublic

   Three bacterial GWAS methods all rolled into one easy-to-use R package

   R 20 5

2. simulate_data_for_convergence_based_bGWASsimulate_data_for_convergence_based_bGWASPublic

   Simulation of genotype and phenotype data to benchmark hogwash, a convergence based bacterial genome-wide association study (bGWAS) method

   R 1 1

3. Snitkin-Lab-Umich/prewasSnitkin-Lab-Umich/prewasPublic

   R package to perform data pre-processing for more informative bacterial GWAS

   R 5 3

4. clinical_cdifficile_trehalose_variantsclinical_cdifficile_trehalose_variantsPublic

   Analysis of association between trehalose utilization variants in clinical C. difficile isolates and infection severity

   R 1

5. cdifficile_gwascdifficile_gwasPublic

   GWAS on C. difficile

   R