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1. piranhapiranhaPublic

   Scripts for file processing and analysis in phylogenetics and phylogeography

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2. bgc_toolsbgc_toolsPublic

   Utilities for automating bgc (Bayesian genomic cline) file prep, analysis, and results plotting

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3. MAGNETMAGNETPublic

   Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci)

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4. GaussClustGaussClustPublic

   Clustering using Gaussian mixture modeling for species delimitation and classification

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5. GBSequenceMinerGBSequenceMinerPublic

   Tool for mining GenBank accession numbers & DNA sequences from manuscript PDFs

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6. How To Convert Markdown to PDFHow To Convert Markdown to PDF

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   #How to convert markdown to PDF:

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   This post reviews several methods for converting a Markdown (.md) formatted file to PDF, from UNIX or Linux machines.

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