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1. SciML/Catalyst.jlSciML/Catalyst.jlPublic

   Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

   Julia 471 79

2. SciML/JumpProcesses.jlSciML/JumpProcesses.jlPublic

   Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

   Julia 140 37

3. SciML/ReactionNetworkImporters.jlSciML/ReactionNetworkImporters.jlPublic

   Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

   Julia 26 9

4. ibmethod2dibmethod2dPublic

   MATLAB 2