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@iquasere
iquasere
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📀
HPCing

João Sequeira iquasere

📀
HPCing

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  • Pro

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@HCEMM

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iquasere/README.md

I was a PhD student, using bioinformatics to "Uncover the role of conductive nanomaterials in anaerobic digestion".

Tools for meta-omics analyses

My work has mostly been the development of tools for analyses of meta-omics data, i.e., the study of the collective genomes, transcriptomes or proteomes of a microbial community.

These are the main tools I have developed for meta-omics analyses:

UPIMAPI, reCOGnizer and KEGGCharter

UPIMAPI,reCOGnizer andKEGGCharter are tools developed for the analyses of omics data, and optimized for handling the challenges of meta-omics.

MOSCA

MOSCA is a powerful pipeline developed for metagenomics (MG), metatranscriptomics (MT) and metaproteomics (MP) integrated analyses.

Finally, some metrics about my coding routine:

Code Time

I'm an Early 🐤

🌞 Morning                1674 commits        █████████░░░░░░░░░░░░░░░░   36.03 % 🌆 Daytime                2027 commits        ███████████░░░░░░░░░░░░░░   43.63 % 🌃 Evening                751 commits         ████░░░░░░░░░░░░░░░░░░░░░   16.16 % 🌙 Night                  194 commits         █░░░░░░░░░░░░░░░░░░░░░░░░   04.18 %

📅I'm Most Productive on Wednesday

Monday                   813 commits         ████░░░░░░░░░░░░░░░░░░░░░   17.50 % Tuesday                  912 commits         █████░░░░░░░░░░░░░░░░░░░░   19.63 % Wednesday                1325 commits        ███████░░░░░░░░░░░░░░░░░░   28.52 % Thursday                 652 commits         ████░░░░░░░░░░░░░░░░░░░░░   14.03 % Friday                   557 commits         ███░░░░░░░░░░░░░░░░░░░░░░   11.99 % Saturday                 42 commits          ░░░░░░░░░░░░░░░░░░░░░░░░░   00.90 % Sunday                   345 commits         ██░░░░░░░░░░░░░░░░░░░░░░░   07.43 %

📊This Week I Spent My Time On

💬 Programming Languages: No Activity Tracked This Week🐱‍💻 Projects: No Activity Tracked This Week

I Mostly Code in Python

Python                   11 repos            ████████░░░░░░░░░░░░░░░░░   31.43 % HTML                     9 repos             ██████░░░░░░░░░░░░░░░░░░░   25.71 % Shell                    3 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   08.57 % Java                     3 repos             ██░░░░░░░░░░░░░░░░░░░░░░░   08.57 % JavaScript               1 repo              █░░░░░░░░░░░░░░░░░░░░░░░░   02.86 %

Last Updated on 23/03/2025 18:54:33 UTC

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  1. reCOGnizerreCOGnizerPublic

    A tool for domain based annotation with databases from the Conserved Domains Database

    HTML 30 2

  2. UPIMAPIUPIMAPIPublic

    UniProt Id Mapping through API

    Python 31 4

  3. KEGGCharterKEGGCharterPublic

    A tool for representing genomic potential and transcriptomic expression into KEGG pathways

    Python 54 6

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