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@hodcroftlab

Hodcroft Lab (EVE)

The Epidemiology & Virus Evolution (EVE) Group at Swiss TPH!

Popular repositoriesLoading

  1. covariantscovariantsPublic

    Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

    Python 320 110

  2. ppx-plotsppx-plotsPublic

    Plots of Pathoplexus data

    HTML 1 1

  3. evd68_demoevd68_demoPublic

    Demo files for EVD68 build

  4. enterovirus_a71enterovirus_a71Public

    Snakemake pipeline for creating interactive real-time phylogenetic trees

    Python

  5. coxsackievirus_a6coxsackievirus_a6Public

    Code for Coxsackievirus A6 build on nextstrain.org

    Python

  6. poliovirus_recombinationpoliovirus_recombinationPublic

    Phylogenetics and recombination analysis of Enterovirus C with a focus on vaccine-derived polioviruses

    Python

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