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  1. sopasopaPublic

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    Python 175 27

  2. EaCoNEaCoNPublic

    Easy Copy Number !

    R 21 14

  3. FG-LabFG-LabPublic

    R 10 5

  4. CFSCFSPublic

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    R 7 2

  5. MetaPRISM_PublicMetaPRISM_PublicPublic

    Code support all the analyses and figures for the MetaPRISM paper.

    Python 7 1

  6. single-cellsingle-cellPublic

    R 5 4

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Showing 10 of 54 repositories
  • sopa Public

    Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

    gustaveroussy/sopa’s past year of commit activity
    Python 175BSD-3-Clause 27 26(1 issue needs help) 2 UpdatedMar 17, 2025
  • gustaveroussy/single-cell’s past year of commit activity
    R 5GPL-3.0 4 0 1 UpdatedMar 16, 2025
  • bigr_rna_editing Public

    This pipeline uses SPRINT and RNAEditingIndexer to identify editing event from RNA-seq

    gustaveroussy/bigr_rna_editing’s past year of commit activity
    Python0GPL-3.00 0 0 UpdatedMar 10, 2025
  • PipelineAgentService Public

    PipelineAgentService is a large language model (LLM)-based application designed for the automated management of data processing tasks.

    gustaveroussy/PipelineAgentService’s past year of commit activity
    Python 1MIT 2 0 0 UpdatedMar 5, 2025
  • gustaveroussy/LaurieMengerLab’s past year of commit activity
    HTML0BSD-3-Clause0 0 0 UpdatedFeb 3, 2025
  • FG-Lab Public
    gustaveroussy/FG-Lab’s past year of commit activity
    R 10 5 3 0 UpdatedJan 29, 2025
  • IFSBM-bigdata Public

    Repository with the contents for the coding exercices and the lectures of module 11 of ISFBM university diploma.

    gustaveroussy/IFSBM-bigdata’s past year of commit activity
    R 1 3 0 0 UpdatedJan 6, 2025
  • Rstuff Public

    A compilation of R scripts for different, widely diverse purposes

    gustaveroussy/Rstuff’s past year of commit activity
    R 1GPL-3.00 0 0 UpdatedDec 3, 2024
  • training_bigr Public

    This repository containing all trainings from bioinformatics platform of Gustave Roussy

    gustaveroussy/training_bigr’s past year of commit activity
    HTML00 0 0 UpdatedOct 27, 2024
  • CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    gustaveroussy/CFS’s past year of commit activity
    R 7 2 3 0 UpdatedOct 23, 2024

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