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The goal of glyread is to read and process quantification results fromcommon glycomics and glycoproteomics software, such as Byonic, StrucGP,or pGlyco, and convert them into aglyexp::expriment() object (fromtheglyexp package) for furtheranalysis.

You can install the latest release of glyread fromGitHub with:

# install.packages("remotes")remotes::install_github("glycoverse/glyread@*release")

Or install the development version:

remotes::install_github("glycoverse/glyread")

• Getting started:Here
• Reference:Here

glyread is the entry point for theglycoverse ecosystem. It providesa unified interface for reading and processing data from variousglycomics and glycoproteomics software, and converting them into aglyexp::experiment() object for further analysis.

Used pGlyco3 and pGlycoQuant for glycopeptide identification andquantification? Tryread_pglyco3_pglycoquant()!

library(glyread)exp<- read_pglyco3_pglycoquant("path/to/pGlyco3-pGlycoQuant/result/Quant.spectra.list",sample_info="path/to/sample_info.csv",quant_method="label-free",glycan_type="N")