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id:gomodel:568b0f9600000284title:Antibacterial innate immune response in the intestine via MAPK cascade (C.elegans)taxon:NCBITaxon:6239status:productioncomments:-'Automated change 2023-03-16: RO:0002212 replaced by RO:0002630'-'Automated change 2023-03-16: RO:0002213 replaced by RO:0002629'activities:-id:gomodel:568b0f9600000284/57ec3a7e00000079enabled_by:WB:WBGene00006575molecular_function:evidence:    -term:ECO:0000314reference:PMID:15625192provenances:      -contributor:https://orcid.org/0000-0002-1706-4196date:'2019-09-23'provenances:[]term:GO:0035591occurs_in:evidence:    -term:ECO:0000314reference:PMID:15625192provenances:      -contributor:https://orcid.org/0000-0002-3013-9906date:'2019-06-28'term:GO:0005737part_of:evidence:    -term:ECO:0000315reference:PMID:19837372with_objects:      -WB:WBVar00241222|WB:WBVar00241223provenances:      -contributor:https://orcid.org/0000-0002-1706-4196date:'2021-07-08'term:GO:0140367causal_associations:  -evidence:    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CX2 Conversion

pip install gocam-py[cx2]

Important

This will attempt to install thepygraphviz package, which requiresGraphviz (version 2.46 or later) to be installed. If you are on MacOS and you installed Graphviz with Homebrew, you may need to set the following environment variables first so thatpygraphviz can find the Graphviz installation:

export GRAPHVIZ_PREFIX=$(brew --prefix graphviz)export CFLAGS="-I${GRAPHVIZ_PREFIX}/include"export LDFLAGS="-L${GRAPHVIZ_PREFIX}/lib"

gocam convert -O cx2 model.yaml

gocam convert --help