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Data intensive science for everyone.

galaxyproject.org

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Name		Name	Last commit message	Last commit date
Latest commit History 81,640 Commits
.ci		.ci
.circleci		.circleci
.github		.github
.vscode		.vscode
client		client
config		config
contrib		contrib
cron		cron
database		database
doc		doc
hooks		hooks
lib		lib
packages		packages
scripts		scripts
static		static
templates		templates
test-data		test-data
test		test
tool-data		tool-data
tools		tools
.coveragerc		.coveragerc
.dockerignore		.dockerignore
.flake8		.flake8
.git-blame-ignore-revs		.git-blame-ignore-revs
.gitattributes		.gitattributes
.gitignore		.gitignore
.gitpod.yml		.gitpod.yml
.isort.cfg		.isort.cfg
.k8s_ci.Dockerfile		.k8s_ci.Dockerfile
.pre-commit-config.yaml.sample		.pre-commit-config.yaml.sample
.redocly.lint-ignore.yaml		.redocly.lint-ignore.yaml
.redocly.yaml		.redocly.yaml
CITATION		CITATION
CODE_OF_CONDUCT.md		CODE_OF_CONDUCT.md
CONTRIBUTING.md		CONTRIBUTING.md
CONTRIBUTORS.md		CONTRIBUTORS.md
LICENSE.txt		LICENSE.txt
Makefile		Makefile
README.rst		README.rst
SECURITY.md		SECURITY.md
check_model.sh		check_model.sh
extract_dataset_parts.sh		extract_dataset_parts.sh
manage_db.sh		manage_db.sh
manage_toolshed_db.sh		manage_toolshed_db.sh
mypy.ini		mypy.ini
package.json		package.json
pyproject.toml		pyproject.toml
pytest.ini		pytest.ini
requirements.txt		requirements.txt
rolling_restart.sh		rolling_restart.sh
run.sh		run.sh
run_reports.sh		run_reports.sh
run_tests.sh		run_tests.sh
run_tool_shed.sh		run_tool_shed.sh
tox.ini		tox.ini
tsconfig.json		tsconfig.json

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The latest information about Galaxy can be found on theGalaxy Community Hub.

Community support is available atGalaxy Help.

Galaxy Quickstart

Galaxy requires Python 3.9 or higher. To check your Python version, run:

$python -VPython 3.9.21

Start Galaxy:

$sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in yourbrowser at:http://localhost:8080

For more installation details please see:https://getgalaxy.org/

Documentation is available at:https://docs.galaxyproject.org/

Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at:https://training.galaxyproject.org/

Tools

Tools can be either installed from the Tool Shed or added manually.For details please see thetutorial.Note that not all dependencies for the tools provided in thetool_conf.xml.sample are included. To install them please visit"Manage dependencies" in the admin interface.