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/vrsPublic

Commitb277adb

Browse files
committed
pre-release versioning
1 parentd9acd4b commitb277adb

24 files changed

+98
-98
lines changed

‎schema/vrs/json/Adjacency

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
{
22
"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Adjacency",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Adjacency",
44
"title": "Adjacency",
55
"type": "object",
66
"maturity": "draft",
@@ -39,7 +39,7 @@
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"type": "array",
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"ordered": false,
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"items": {
42-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
42+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4343
},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4545
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
5353
"type": "array",
5454
"ordered": false,
5555
"items": {
56-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
56+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
5757
}
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},
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"type": {
@@ -69,10 +69,10 @@
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"items": {
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"oneOf": [
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{
72-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
72+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
7373
},
7474
{
75-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
75+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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]
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},
@@ -84,13 +84,13 @@
8484
"description": "The sequence found between adjoined sequences.",
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"oneOf": [
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{
87-
"$ref": "/ga4gh/schema/vrs/2.x/json/LengthExpression"
87+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression"
8888
},
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{
90-
"$ref": "/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression"
90+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression"
9191
},
9292
{
93-
"$ref": "/ga4gh/schema/vrs/2.x/json/ReferenceLengthExpression"
93+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/ReferenceLengthExpression"
9494
}
9595
]
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},

‎schema/vrs/json/Allele

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
{
22
"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Allele",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Allele",
44
"title": "Allele",
55
"type": "object",
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"maturity": "draft",
@@ -39,7 +39,7 @@
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"type": "array",
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"ordered": false,
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"items": {
42-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
42+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4343
},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4545
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
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"type": "array",
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"ordered": false,
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"items": {
56-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
56+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
@@ -65,10 +65,10 @@
6565
"location": {
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"oneOf": [
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{
68-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
68+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
6969
},
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{
71-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
71+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
7272
}
7373
],
7474
"description": "The location of the Allele"
@@ -77,13 +77,13 @@
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"description": "An expression of the sequence state",
7878
"oneOf": [
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{
80-
"$ref": "/ga4gh/schema/vrs/2.x/json/LengthExpression"
80+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression"
8181
},
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{
83-
"$ref": "/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression"
83+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression"
8484
},
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{
86-
"$ref": "/ga4gh/schema/vrs/2.x/json/ReferenceLengthExpression"
86+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/ReferenceLengthExpression"
8787
}
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]
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}

‎schema/vrs/json/CisPhasedBlock

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CisPhasedBlock",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CisPhasedBlock",
44
"title": "CisPhasedBlock",
55
"type": "object",
66
"maturity": "draft",
@@ -38,7 +38,7 @@
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"type": "array",
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"ordered": false,
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"items": {
41-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
41+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4242
},
4343
"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4444
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -52,7 +52,7 @@
5252
"type": "array",
5353
"ordered": false,
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"items": {
55-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
55+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
5656
}
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},
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"type": {
@@ -69,17 +69,17 @@
6969
"items": {
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"oneOf": [
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{
72-
"$ref": "/ga4gh/schema/vrs/2.x/json/Allele"
72+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Allele"
7373
},
7474
{
75-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
75+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
7676
}
7777
]
7878
},
7979
"description": "A list of Alleles that are found in-cis on a shared molecule."
8080
},
8181
"sequenceReference": {
82-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceReference",
82+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceReference",
8383
"description": "An optional Sequence Reference on which all of the in-cis Alleles are found. When defined, this may be used to implicitly define the `sequenceReference` attribute for each of the CisPhasedBlock member Alleles."
8484
}
8585
},

‎schema/vrs/json/CopyNumberChange

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
{
22
"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CopyNumberChange",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CopyNumberChange",
44
"title": "CopyNumberChange",
55
"type": "object",
66
"maturity": "draft",
@@ -39,7 +39,7 @@
3939
"type": "array",
4040
"ordered": false,
4141
"items": {
42-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
42+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4343
},
4444
"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4545
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,16 +53,16 @@
5353
"type": "array",
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"ordered": false,
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"items": {
56-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
56+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
5757
}
5858
},
5959
"location": {
6060
"oneOf": [
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{
62-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
62+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
6363
},
6464
{
65-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
65+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
6666
}
6767
],
6868
"description": "A location for which the number of systemic copies is described."
@@ -75,7 +75,7 @@
7575
},
7676
"copyChange": {
7777
"description": "MUST be a Coding representing one of \"EFO:0030069\" (complete genomic loss), \"EFO:0020073\" (high-level loss), \"EFO:0030068\" (low-level loss), \"EFO:0030067\" (loss), \"EFO:0030064\" (regional base ploidy), \"EFO:0030070\" (gain), \"EFO:0030071\" (low-level gain), \"EFO:0030072\" (high-level gain).",
78-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Coding"
78+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Coding"
7979
}
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},
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"required": [

‎schema/vrs/json/CopyNumberCount

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@@ -1,6 +1,6 @@
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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CopyNumberCount",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CopyNumberCount",
44
"title": "CopyNumberCount",
55
"type": "object",
66
"maturity": "draft",
@@ -39,7 +39,7 @@
3939
"type": "array",
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"ordered": false,
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"items": {
42-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
42+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4343
},
4444
"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4545
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,16 +53,16 @@
5353
"type": "array",
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"ordered": false,
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"items": {
56-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"location": {
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"oneOf": [
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{
62-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
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},
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{
65-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
65+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
6666
}
6767
],
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"description": "A location for which the number of systemic copies is described."
@@ -76,7 +76,7 @@
7676
"copies": {
7777
"oneOf": [
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{
79-
"$ref": "/ga4gh/schema/vrs/2.x/json/Range"
79+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Range"
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},
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{
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"type": "integer"

‎schema/vrs/json/DerivativeMolecule

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/DerivativeMolecule",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/DerivativeMolecule",
44
"title": "DerivativeMolecule",
55
"type": "object",
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"maturity": "draft",
@@ -38,7 +38,7 @@
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"type": "array",
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"ordered": false,
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"items": {
41-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
41+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
4242
},
4343
"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4444
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -52,7 +52,7 @@
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"type": "array",
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"ordered": false,
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"items": {
55-
"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
55+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
@@ -68,10 +68,10 @@
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"items": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/TraversalBlock"
71+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/TraversalBlock"
7272
},
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{
74-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
74+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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]
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},

‎schema/vrs/json/Expression

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Expression",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression",
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"title": "Expression",
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"type": "object",
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"maturity": "draft",

‎schema/vrs/json/LengthExpression

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Original file line numberDiff line numberDiff line change
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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/LengthExpression",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression",
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"title": "LengthExpression",
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"type": "object",
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"maturity": "draft",
@@ -37,7 +37,7 @@
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
40+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4343
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
5353
"description": "The length of the sequence.",
5454
"oneOf": [
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{
56-
"$ref": "/ga4gh/schema/vrs/2.x/json/Range"
56+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Range"
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},
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{
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"type": "integer"

‎schema/vrs/json/LiteralSequenceExpression

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression",
44
"title": "LiteralSequenceExpression",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
40+
"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4343
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -50,7 +50,7 @@
5050
"default": "LiteralSequenceExpression"
5151
},
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"sequence": {
53-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceString",
53+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceString",
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"description": "the literal sequence"
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}
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},

‎schema/vrs/json/Location

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Location",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Location",
44
"title": "Location",
55
"type": "object",
66
"description": "A contiguous segment of a biological sequence.",
7-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation",
7+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation",
88
"discriminator": {
99
"propertyName": "type"
1010
}

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