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Improvements to ape

Status: Open.

#147 In emmanuelparadis/ape;

·KlausVigo openedon Oct 14, 2025

correlogram.formula fails if data is a tibble

Status: Open.

#146 In emmanuelparadis/ape;

·richardjtelford openedon Oct 5, 2025

Recovering node positions in a plot

Status: Open.

#145 In emmanuelparadis/ape;

·KamilSJaron openedon Jul 30, 2025

rTraitDisc() Q matrix generation

Status: Open.

#144 In emmanuelparadis/ape;

·ej91016 openedon May 7, 2025

<code>read.tree()</code> produces undefined behaviour when outer parentheses missing

bugSomething isn't workingSomething isn't working

Status: Open.

#142 In emmanuelparadis/ape;

·ms609 openedon Apr 28, 2025

fixed read.nexus() reorders the tip labels

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#141 In emmanuelparadis/ape;

·emmanuelparadis openedon Apr 9, 2025

phymltest() producing the double amount of trees

issue outside ape

Status: Open.

#105 In emmanuelparadis/ape;

·mickvv openedon Nov 22, 2023

wider support for zero-leaf trees

enhancementNew feature or requestNew feature or request

Status: Open.

#94 In emmanuelparadis/ape;

·emmanuelparadis openedon Jul 21, 2023

possible bug in ace

help wantedExtra attention is neededExtra attention is needed

questionFurther information is requestedFurther information is requested

Status: Open.

#63 In emmanuelparadis/ape;

·RubyRedlich openedon Aug 9, 2022