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dynwrap contains the code for a common model of single-celltrajectories. The package can:

• Wrap the input data of a trajectory inference method, such asexpression and prior information
• Run a trajectory inference method in R, in a docker container or asingularity container
• Wrap the output of a trajectory inference method, such as thepseudotime, a clustering or a branch network, and convert it into acommon trajectory model
• Further postprocess and adapt the trajectory model, such as labellingthe milestones and rooting the trajectory

Documentation and the API reference for dynwrap can be found at thedyvnerse documentation website:https://dynverse.org/ .

dynwrap was used to wrap 50+ trajectory inference method within dockercontainers indynmethods.

The advantage of using a common model is that it allows:

• Comparison between a prediction and a gold standard, eg. usingdyneval
• Comparing two predictions
• Easily visualise the trajectory, eg. usingdynplot
• Extracting relevant features/genes, eg. usingdynfeature

Check outnews(package = "dynwrap") orNEWS.md for a fulllist of changes.

• BUG FIXconvert_definition(): Fix for purrr having deprecatedinvoke in favour ofexec (PR #166).

• Resubmission after babelwhale was removed from CRAN.

• MINOR CHANGE: Added@return documentation to all functions.