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1. CRI-Biocore/Spatial-Transcriptomics-Workshop-2025CRI-Biocore/Spatial-Transcriptomics-Workshop-2025Public

   HTML 2 2

2. Fiberseq_PacBio_preprocessingFiberseq_PacBio_preprocessingPublic

   Pipeline for Pre-processing for PacBio generated Fiber-seq Data, helps with 5mC and 6mA base modification calling, alignment, phasing and nucleosome calling. This pipeline was designed for the Lab …

   Python

3. Fiberseq_QCFiberseq_QCPublic

   Snakemake pipeline for Base and functional QC for Fiberseq analysis using PacBio and Nanopore data. This pipeline was designed for the Lab of Sebastian Pott at UC

   Python

4. Fiberseq_Nanopore_preprocessingFiberseq_Nanopore_preprocessingPublic

   Pipeline for Pre-processing for Nanopore generated Fiber-seq Data, helps with 5mC and 6mA base modification calling, alignment, phasing and nucleosome calling. This pipeline was designed for the La…

   Python

5. Spatial-Transcriptomics-Workshop-2025Spatial-Transcriptomics-Workshop-2025Public

   Forked fromCRI-Biocore/Spatial-Transcriptomics-Workshop-2025

   Spatial Transcriptomics Workshop from the CRI

   HTML

6. SNAPPSNAPPPublic

   SNAPP sequencing data pipeline - haplotypes from targeted amplicon sequencing

   R 1