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1. PalantirPalantirPublic

   Single cell trajectory detection

   Jupyter Notebook 296 61

2. PhenoGraphPhenoGraphPublic

   Forked fromjacoblevine/PhenoGraph

   Subpopulation detection in high-dimensional single-cell data

   Python 73 29

3. HarmonyHarmonyPublic

   Harmony framework for connecting scRNA-seq data from discrete time points

   Jupyter Notebook 53 14

4. magicmagicPublic

   Forked fromKrishnaswamyLab/MAGIC

   MAGIC - imputation and de-noising single-cell RNA seq data sets

   Jupyter Notebook 27 12

5. seqcseqcPublic

   Forked fromambrosejcarr/seqc

   Single-Cell Sequencing Quality Control and Processing Software

   Python 16 5

6. cellrankcellrankPublic

   CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data.

   2 1