VBCF NGS

Vienna Biocenter Core Sequencing Facility

5 followers
Vienna, Austria
https://www.viennabiocenter.org/facilities/next-generation-sequencing/

Popular repositoriesLoading

fastqcfastqcPublic
csf fork of fastqc for usage on selected reads of unaligned bam file
Java 49 41
illuminasavrilluminasavrPublic
Parses and Plots Illumina SAV files
JavaScript 13 1
hinkskallehinkskallePublic
OCI + Singularity Container Registry
Python 8 1
illuminaBackupilluminaBackupPublic
small backup program that copies the important files from illumina sequencing runs
Scala 2 1
bam2fqbam2fqPublic
bam to fastq converter ui
Java 1
forskallerforskallerPublic
simple small API for our superior in house LIMS built by Heinz
R 1

Repositories

Showing 10 of 19 repositories

controldna Public
is a bioinformatics best-practice analysis pipeline for alignment for our control DNA
csf-ngs/controldna’s past year of commit activity
Nextflow0MIT0 0 0 UpdatedOct 7, 2024
hinkskalle Public
OCI + Singularity Container Registry
csf-ngs/hinkskalle’s past year of commit activity
Python 8MIT 1 10 1 UpdatedJan 25, 2023
hinkskalle-dev Public
Development Container for Hinkskalle
csf-ngs/hinkskalle-dev’s past year of commit activity
Dockerfile00 0 0 UpdatedOct 17, 2022
forskalle-api Public
Command Line Interface and Python API for Forskalle
csf-ngs/forskalle-api’s past year of commit activity
Python00 0 0 UpdatedMay 17, 2022
hinkskalle-api Public
Talking to Hinkskalle
csf-ngs/hinkskalle-api’s past year of commit activity
Python0MIT 1 0 0 UpdatedMay 6, 2022
swagspotta Public
Generate typescript + python classes from Swagger/OpenAPI 2 definitions
csf-ngs/swagspotta’s past year of commit activity
Python0MIT0 0 0 UpdatedApr 25, 2022
forskaller Public
simple small API for our superior in house LIMS built by Heinz
csf-ngs/forskaller’s past year of commit activity
R 1GPL-2.00 0 0 UpdatedApr 24, 2022
rnaseq Public Forked fromnf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
csf-ngs/rnaseq’s past year of commit activity
Nextflow0MIT 744 0 0 UpdatedMay 13, 2021
SQANTI2 Public Forked fromMagdoll/SQANTI2
Private repo for Liz's modified SQANTI
csf-ngs/SQANTI2’s past year of commit activity
Python0 15 0 0 UpdatedApr 8, 2019
cDNA_Cupcake Public Forked fromMagdoll/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
csf-ngs/cDNA_Cupcake’s past year of commit activity
Python0BSD-3-Clause-Clear 102 0 0 UpdatedMar 28, 2019