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Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)

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cjvanlissa/worcs

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CRAN statusCRAN RStudio mirror downloadslifecycleR-CMD-checkContributor CovenantCII Best Practices

The Workflow for Open Reproducible Code in Science (WORCS) is an easy toadopt approach to ensuring a research project meets the requirements ofOpen Science from the start. It is based on a “good enough” philosophy,prioritizing user-friendliness over exhaustiveness. It can be usedeither in absence of, or in parallel to, existing requirements for Openworkflows. It can also be enhanced with more elaborate solutions forspecific issues.

Where do I start?

For most users, the recommended starting point is toread the paper,published in DataScience,which introduces the WORCS workflow, explains the underlying tools, andillustrates how theworcs package can be used to create a new projectthat follows the workflow.

The workflow is illustrated below; theworkflowvignettedescribes each step in detail.

A diagram of the WORCS workflow.

Installing the package

Before installing the package, please readthisvignette, whichexplains how to set up your computer forworcs (using the CRANversion).

If you know what you’re doing and you wish to install the developmentversion of theworcs package from GitHub instead, you can use:

if(!requireNamespace("remotes")) install.packages("remotes")remotes::install_github("cjvanlissa/worcs",dependencies=TRUE,update="never")

Citing WORCS

You can cite WORCS using the following citation (please use the samecitation for either the package, or the paper):

Van Lissa, C. J., Brandmaier, A. M., Brinkman, L., Lamprecht, A.,Peikert, A., , Struiksma, M. E., & Vreede, B. (2021). WORCS: AWorkflow for Open Reproducible Code in Science. Data Science. DataScience, vol. 4, no. 1, pp. 29-49. DOI: 10.3233/DS-210031.

About this repository

This repository contains the following:

  1. An R-package calledworcs, with convenience functions tofacilitate the WORCS workflow.
  2. In the subfolder./paper, the source files for the paperdescribing the WORCS workflow.

The repository serves two functions: To allow users to install theworcs package, and to allow collaborators access to the source codefor the package and paper.

Repository structure

FileDescriptionUsage
_pkgdown.ymlYAML for package websitedo not edit
DESCRIPTIONR-package DESCRIPTIONdo not edit
LICENSE.mdProject licensedo not edit
NAMESPACER-package namespacemachine-written
README.mdRead this file to get started!do not edit
README.RmdR-markdown source for readme.mdhuman editable
worcs.RprojRStudio project filedo not edit
docs/Package websitemachine-written
inst/RStudio project template fileshuman editable
man/R-package documentationdo not edit
paper/WORCS paper source fileshuman editable
R/R-package source codehuman editable
vignettes/R-package vignetteshuman editable

Contributing and Contact Information

We are always eager to receive user feedback and contributions to helpus improve both the workflow and the software. Major contributionswarrant coauthorship to the package. Please contact the lead author atc.j.vanlissa@uu.nl, or:

By participating in this project, you agree to abide by theContributorCode of Conduct v2.0.Contributions to the package must adhere to thetidyverse styleguide. When contributing code, please addtests for that contribution to thetests/testthat folder, and ensurethat these tests pass in theGitHub Actionspanel.

Acknowledgements

The worcs logo is inspired by the Open Science Badges by the Center forOpen Science (CC-BY-4.0), and makes use of the gear, services, gears,preferences, settings icon, made by MD Badsha Meah fromwww.freeicons.io(CC-BY-3.0).

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Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)

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