- Notifications
You must be signed in to change notification settings - Fork12
Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)
License
cjvanlissa/worcs
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
The Workflow for Open Reproducible Code in Science (WORCS) is an easy toadopt approach to ensuring a research project meets the requirements ofOpen Science from the start. It is based on a “good enough” philosophy,prioritizing user-friendliness over exhaustiveness. It can be usedeither in absence of, or in parallel to, existing requirements for Openworkflows. It can also be enhanced with more elaborate solutions forspecific issues.
For most users, the recommended starting point is toread the paper,published in DataScience,which introduces the WORCS workflow, explains the underlying tools, andillustrates how theworcs package can be used to create a new projectthat follows the workflow.
The workflow is illustrated below; theworkflowvignettedescribes each step in detail.
Before installing the package, please readthisvignette, whichexplains how to set up your computer forworcs (using the CRANversion).
If you know what you’re doing and you wish to install the developmentversion of theworcs package from GitHub instead, you can use:
if(!requireNamespace("remotes")) install.packages("remotes")remotes::install_github("cjvanlissa/worcs",dependencies=TRUE,update="never")
You can cite WORCS using the following citation (please use the samecitation for either the package, or the paper):
Van Lissa, C. J., Brandmaier, A. M., Brinkman, L., Lamprecht, A.,Peikert, A., , Struiksma, M. E., & Vreede, B. (2021). WORCS: AWorkflow for Open Reproducible Code in Science. Data Science. DataScience, vol. 4, no. 1, pp. 29-49. DOI: 10.3233/DS-210031.
This repository contains the following:
- An R-package called
worcs, with convenience functions tofacilitate the WORCS workflow. - In the subfolder
./paper, the source files for the paperdescribing the WORCS workflow.
The repository serves two functions: To allow users to install theworcs package, and to allow collaborators access to the source codefor the package and paper.
| File | Description | Usage |
|---|---|---|
| _pkgdown.yml | YAML for package website | do not edit |
| DESCRIPTION | R-package DESCRIPTION | do not edit |
| LICENSE.md | Project license | do not edit |
| NAMESPACE | R-package namespace | machine-written |
| README.md | Read this file to get started! | do not edit |
| README.Rmd | R-markdown source for readme.md | human editable |
| worcs.Rproj | RStudio project file | do not edit |
| docs/ | Package website | machine-written |
| inst/ | RStudio project template files | human editable |
| man/ | R-package documentation | do not edit |
| paper/ | WORCS paper source files | human editable |
| R/ | R-package source code | human editable |
| vignettes/ | R-package vignettes | human editable |
We are always eager to receive user feedback and contributions to helpus improve both the workflow and the software. Major contributionswarrant coauthorship to the package. Please contact the lead author atc.j.vanlissa@uu.nl, or:
- File a GitHub issue forfeedback, bug reports or feature requests
- Make a pull request tocontribute your code or prose
By participating in this project, you agree to abide by theContributorCode of Conduct v2.0.Contributions to the package must adhere to thetidyverse styleguide. When contributing code, please addtests for that contribution to thetests/testthat folder, and ensurethat these tests pass in theGitHub Actionspanel.
The worcs logo is inspired by the Open Science Badges by the Center forOpen Science (CC-BY-4.0), and makes use of the gear, services, gears,preferences, settings icon, made by MD Badsha Meah fromwww.freeicons.io(CC-BY-3.0).
About
Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)
Resources
License
Uh oh!
There was an error while loading.Please reload this page.
Stars
Watchers
Forks
Packages0
Uh oh!
There was an error while loading.Please reload this page.
Contributors11
Uh oh!
There was an error while loading.Please reload this page.

