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@brentp
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Brent Pedersen brentp

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@quinlan-lab

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  1. echtvarechtvarPublic

    using all the bits for echt rapid variant annotation and filtering

    Rust 148 10

  2. mosdepthmosdepthPublic

    fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

    Nim 728 100

  3. slivarslivarPublic

    genetic variant expressions, annotation, and filtering for great good.

    Nim 255 23

  4. somaliersomalierPublic

    fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

    Nim 276 40

  5. vcfannovcfannoPublic

    annotate a VCF with other VCFs/BEDs/tabixed files

    Go 371 56

  6. cyvcf2cyvcf2Public

    cython + htslib == fast VCF and BCF processing

    Cython 392 72


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