Software - Bioinformatics - Genomics

🌐Website ✉️Emailgithub.com/bmpvieiraⓂ️edium.com/@bmpvieira

• Data Science / Machine Learning
  • Python (Numpy, Pandas, Rapids, PyTorch, Datashader, Dask, Jupyter,...)
  • R (tidyverse, ggplot2,...)
• Bioinformatics
  • Founder ofBionode.io community (Node.js Streams for Genomic Big Data)
  • AdvancedShell Scripting (BASH, Fish, ZSH,...)
  • AnalysisPipelines Workflows (Nextflow, SnakeMake,...)
• Full Stack
  • Node.js, TypeScript, Ember, Angular, Express, MongoDB,SQL, HTML5, CSS3
• DevOps
  • Docker, Singularity
  • AWS, Azure, Google Cloud
  • NixOS, Arch Linux, Ubuntu
  • Git, GitHub, GitLab
  • Unit Testing, Continuous Integration
• Exposure and interests
  • Rust, Swift

• 2016-2017 | Awarded Mozilla Science Lab fellowship (one of four, out of 483 submissions) totravel around the world and champion Open Science through talks, workshops, and hackathons.
• 2016-2018 | Mentored3 Google Summer of Code students for theOpen Bioinformatics Foundation to build genomicdata analysis workflows.
• 2014-2018 | Master's in Bioinformatics and R course instructor at Queen Mary, U. of London during PhD.
• 2012 | Instructor and Content Developer for Python 101 Course at U. of Lisbon
• Speaker at multiple international conferences, meetups and hackathons for Bioinformatics, Open Science, Reproducibility, and Node.js.

• Since Oct 2021 | Senior Backend Developer @Lifebit.ai
• 2019-2021 | Co-Chief Technology Officer @Resurgo.comApplying Machine Learning andnovel visualisation techniques to find target candidates for RNA therapeutics in diseases such as cancer and now COVID-19.
• 2018 | Senior Bioinformatics Developer @Repositive.io
• 2014-2018 | PhD in Bioinformatics @Queen Mary, U. of London
• 2012-2013 | FullStack Dev @ESEB2013.com
• 2009-2013 | Bioinformatician @CoBiG2
• 2004-2009 | Master's in Human Biology and Environment @ U. of Lisbon
• Other companies:Stencila (reproducible notebooks),Code for Science and Society (Dat project — distributed data protocol) andGeekli.st (backend dev).

Full CV @ linkedin.com/in/bmpvieira/

Popular repositoriesLoading

1. simple-corsproxysimple-corsproxyPublic

   Proxy to access resources that lack the Access-Control-Allow-Origin * header

   JavaScript 31 12

2. heroku-dat-templateheroku-dat-templatePublic

   A simple Heroku app template for deploying Dat

   JavaScript 16 8

3. python101python101Public archive

   Python 101 course slides

   Python 12 4

4. DockerfilesDockerfilesPublic

   My Dockerfiles. Trusted Builds also available in the Docker registry

   Shell 6

5. gulp-revealgulp-revealPublic archive

   HTML to Reveal.js

   HTML 5 6

6. cobig2cobig2Public archive

   AngularJS app that uses many APIs. Used in the new CoBiG² website.

   CoffeeScript 2 3