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A Java GUI library for displaying and editing multiple sequence alignments and attached raw- and metadata

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bioinfweb/LibrAlign

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LibrAlign is an open sourceJava library providing GUI components for displaying and editing multiple sequence alignments (MSAs) and attached raw- and metadata.

It is distributed underLGPL. More information can be found athttp://bioinfweb.info/LibrAlign/.

Key features

  • Flexible and powerful GUI components for displaying one or a set of MSAs together
  • Data areas can be attached to each sequence or alignment. A set of predefined data areas is included and custom areas can easily be added using the API interfaces.
  • All GUI components are based onTIC and can therefore be used both inSwing andSWT (includingEclipse RCP) applications.
  • Reading and writing data and metadata from and to numerous alignment formats usingJPhyloIO
  • Different extensible data model implementations, including compressed sequence storage to handle large datasets
  • Interoperability withBioJava

Getting started

Adocumentation and a fullJavaDoc are available. A basic demo application can be foundhere.

If you have further questions, feel free to ask one on ourResearchGate project page or contactsupport@bioinfweb.info.

Source code

ThisGitHub repository in a synchronized mirror of themaster repository at bioinfweb. Feedback and pull requests are welcome. Synchronization was made possible bySubGit.

Issues

If you want to submit a bug report or feature request, please use our public bug tracking system athttp://bioinfweb.info/LibrAlign/Bugs. (We do not manage issues on GitHub directly.)

License

The latest versions ofLibrAlign are distrubuted underGNU General Lesser Public License Version 3. SeeNOTICE.txt for further details.

This product includes dependencies developed by theApache Software Foundation distributed under the terms of theApache License Version 2.0.

Binary releases

Binary releases andMaven code can be found athttp://bioinfweb.info/LibrAlign/Download.

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