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@biocore-ntnu

BioCore, NTNU

The Bioinformatics core facility at NTNU

Popular repositoriesLoading

  1. epic2epic2Public

    Ultraperformant reimplementation of SICER

    Cython 56 10

  2. snpflipsnpflipPublic archive

    Report reverse and ambiguous strand SNPs in GWAS data

    Python 32 8

  3. epicepicPublic

    (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

    Python 31 6

  4. kerneltreekerneltreePublic

    Forked frommarkfasheh/interval-tree

    Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

    C 25 2

  5. chip_seq_pipelinechip_seq_pipelinePublic

    ChIP-Seq Analysis Pipeline with emphasis on differential expression

    Python 9

  6. hisat2_indexhisat2_indexPublic

    Python

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Showing 8 of 8 repositories
  • epic2 Public

    Ultraperformant reimplementation of SICER

    biocore-ntnu/epic2’s past year of commit activity
    Cython 56MIT 10 36(1 issue needs help) 0 UpdatedSep 5, 2021
  • biocore-ntnu/ldetect_original’s past year of commit activity
    Python00 0 0 UpdatedJan 8, 2020
  • snpflip Public archive

    Report reverse and ambiguous strand SNPs in GWAS data

    biocore-ntnu/snpflip’s past year of commit activity
    Python 32 8 4 0 UpdatedMay 15, 2019
  • kerneltree Public Forked frommarkfasheh/interval-tree

    Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

    biocore-ntnu/kerneltree’s past year of commit activity
    C 25 6 0 0 UpdatedApr 8, 2019
  • bioconda-recipes Public Forked frombioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    biocore-ntnu/bioconda-recipes’s past year of commit activity
    Shell0 3,430 0 0 UpdatedJan 24, 2019
  • epic Public

    (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

    biocore-ntnu/epic’s past year of commit activity
    Python 31MIT 6 27 0 UpdatedNov 21, 2018
  • chip_seq_pipeline Public

    ChIP-Seq Analysis Pipeline with emphasis on differential expression

    biocore-ntnu/chip_seq_pipeline’s past year of commit activity
    Python 90 0 0 UpdatedOct 16, 2018
  • biocore-ntnu/hisat2_index’s past year of commit activity
    Python00 0 0 UpdatedJun 21, 2017

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