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Hugo Gene Nomenclature Consortium (HGNC) to BEL

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bio2bel/hgnc

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This package creates:

  • HGNC BEL namespace
  • HGNC gene families BEL namespace,
  • HGNC gene family membership BEL Script
  • orthology BEL script

InstallationCurrent version on PyPIStable Supported Python VersionsMIT License

bio2bel_hgnc can be installed easily fromPyPI with thefollowing code in your favorite terminal:

$ pip install bio2bel_hgnc

or from the latest code onGitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/hgnc.git

Setup

HGNC can be downloaded and populated from either the Python REPL or the automatically installed command lineutility.

Python REPL

>>>importbio2bel_hgnc>>>hgnc_manager=bio2bel_hgnc.Manager()>>>hgnc_manager.populate()

Command Line Utility

bio2bel_hgnc populate

Citations


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