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Releases: bcgsc/arcs
Releases · bcgsc/arcs
ARCS v1.2.8
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- Release version 1.2.8
- Add optional parameter 'prefix' to
arcs-make- if specified, soft-links the final scaffolds fasta file to a file with this prefix - Update documentation
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ARCS v1.2.7
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- Release version 1.2.7
- Update
arcsversion message - Update e-mails, copyright years
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ARCS v1.2.6
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- Release version 1.2.6
- Bugfix for
arks-tigmintandarcs-tigmintrules inarcs-make - Update documentation
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ARCS v1.2.5
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- Release version 1.2.5
- Update
arcs-maketo allow uncompressed long read files as input
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ARCS v1.2.4
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- Release version 1.2.4
- Remove integrated btllib, make it a dependency
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ARCS v1.2.3
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- Release version 1.2.3
- Add arcs-make, makeTSVfile.py to 'bin' folder
- Add
-Ioption to minimap2 for arcs-long target to avoid
splitting index if genome size large- Set to 50G by default, can be changed using
minimap2_index_size
- Set to 50G by default, can be changed using
- Update documentation
- Bugfixes
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ARCS v1.2.2
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- Release version 1.2.2
long-to-linked-pescript ported to C++- pseudo-linked reads are streamed directly from
long-to-linked-petoarcs --arksin ARKS-long mode - Bugfixes
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ARCS v1.2.1
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- Release version 1.2.1
- Added
arcs-maketotar.gz
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ARCS v1.2.0
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- Release version 1.2.0
- Users can now also use long reads to scaffold draft assemblies
- Added
--arcs-longand--arks-longmodes toarcs-makeso users can run the ARCS+LINKS pipeline using long reads as inputlong-to-linked-pesegments and assigns barcodes to the long
reads prior to running ARCS and LINKS
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ARCS v1.1.1
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- Release version 1.1.1
- Users can now set the
--pairparameter to output a tsv file with the number of links supporting each orientation (hh, ht, th, tt) of each scaffold pair - Bug fix to binomial test