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Tutorial in practical research data management: creating simple metadata files using dataspice

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annakrystalli/dataspice-tutorial

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DOI

The goal of dataspice-tutorial is a practical exercise in creating metadata for an example field collected data product using packagedataspice.

  • Understand basic metadata and why it is important
  • Understand where and how to store them
  • Understand how they can feed into more complex metadata objects.



dataspice

Packagedataspice makes it easier for researchers to create basic, lightweight and concise metadata files for their datasets. Metadata fields are based onschema.org


Data source : NEON data portal

Woody plant vegetation structure

This data product contains the quality-controlled, native sampling resolution data from in-situ measurements of live and standing dead woody individuals and shrub groups, from all terrestrial NEON sites with qualifying woody vegetation. Theexact measurements collected per individual depend on growth form, and these measurements are focused on:

  • enabling biomass and productivity estimation,
  • estimation of shrub volume and biomass
  • calibration / validation of multiple NEON airborne remote-sensing data products.

In general, comparatively large individuals that are visible to remote-sensing instruments are mapped, tagged and measured, and other smaller individuals are tagged and measured but not mapped. Smaller individuals may be subsampled according to a nested subplot approach in order to standardize the per plot sampling effort.

Structure and mapping data are reportedper individual per plot; sampling metadata, such asper growth form sampling area (m2) or National Land Cover Database Vegetation Type Name (NLCD class) are reportedper plot.

For additional details, see protocols:

  • NEON.DP1.10098/NEON.DP1.10045: NEON User Guide to Woody Plant Vegetation Structure (NEON.DP1.10098) and Non- herbaceous Perennial Vegetation Structure (NEON.DP1.10045)

  • NEON.DOC.000987vG: TOS Protocol and Procedure: Measurement of Vegetation Structure, and Science Design

  • NEON.DOC.000914: TOS Science Design for Plant Biomass, Productivity and Leaf Area Index.


dataspice exercise data

The data are a trimmed subset of data downladed from theNEON data portal after filtering for:

  • time periods between2015-06 -2016-06

  • locations within NEON Domain areaD01: Northeast

Filter returned data from2 sites from2015-6 to2015-11.


vst_perplotperyear.csv

Plot level data

datesiteIDplotIDplotTypenlcdClassdecimalLatitudedecimalLongitudetreesPresentshrubsPresentlianasPresenttotalSampledAreaTreestotalSampledAreaShrubSaplingtotalSampledAreaLianarecordedBy
2015-06-06BARTBART_042towerdeciduousForest44.06019-71.28805NANANA800400800wmtulGhdefWiPr5g1VRF0YnRBawgSBx1
2015-07-16BARTBART_047towerdeciduousForest44.06496-71.29087NANANA800400800XdV86USKkiYZfb6rmwpnK/f2Yah5qnQO
2015-07-21BARTBART_047towerdeciduousForest44.06496-71.29087NANANA800400800XdV86USKkiYZfb6rmwpnK/f2Yah5qnQO
2015-07-22BARTBART_034towermixedForest44.06428-71.28561NANANA800400800bWvVSKjgptV89BwHA3h10JNaeV+PHmDU
2015-07-22BARTBART_041towerdeciduousForest44.06534-71.28561NANANA800400800MRgCvwP2WueoGZahvpQXNZ+be1CYdCGm
2015-07-22BARTBART_033towerdeciduousForest44.06320-71.28367NANANA800100800XdV86USKkiYZfb6rmwpnK/f2Yah5qnQO

vst_mappingandtagging.csv

Individual level data

datesiteIDplotIDindividualIDtaxonIDscientificNamerecordedBy
2015-08-04BARTBART_051NEON.PLA.D01.BART.04140TSCATsuga canadensis (L.) Carrière6HzkzFDdLaNgPi31AaqxNPsuI5nRHqWu
2015-08-04BARTBART_051NEON.PLA.D01.BART.03804TSCATsuga canadensis (L.) Carrière6HzkzFDdLaNgPi31AaqxNPsuI5nRHqWu
2015-07-22BARTBART_034NEON.PLA.D01.BART.02967FAGRFagus grandifolia Ehrh.zODC+zTh3jdHKFo7lDoQcuNYRkWsGu3I
2015-08-26BARTBART_036NEON.PLA.D01.BART.05106FAGRFagus grandifolia Ehrh.zODC+zTh3jdHKFo7lDoQcuNYRkWsGu3I
2015-08-04BARTBART_051NEON.PLA.D01.BART.04080PICEAPicea sp.6HzkzFDdLaNgPi31AaqxNPsuI5nRHqWu
2015-08-04BARTBART_039NEON.PLA.D01.BART.02904ATSCATsuga canadensis (L.) Carrière0uwWHUCkGoRVT9RpJxngFjI8cZrsFWgn


Citation

National Ecological Observatory Network. 2018. Data Products: DP1.10098.001. Provisional data downloaded fromhttp://data.neonscience.org on 2018-05-04. Battelle, Boulder, CO, USA


Creative Commons License
dataspice tutorial is licensed under aCreative Commons Attribution 4.0 International License.

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