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A R package that evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the normal state.

If you use this package for a publication, we would ask you to cite thefollowing:

Belleau P, Deschênes A, Sun G et al. CNprep: Copy number event detection [version 1; not peer reviewed]. F1000Research 2020, 9:743 (poster) (https://doi.org/10.7490/f1000research.1118065.1)

Guoli Sun,Pascal Belleau,Astrid Deschênes and Alexander Krasnitz

To install the latest accessible version, thedevtoolspackage is required.

## To install the development version from GitHubinstall.packages("devtools")devtools::install_github("KrasnitzLab/CNprep")

This package and the underlyingCNprep code are distributed underthe GPL-2. You are free to use and redistribute this software.

For more information on GPL-2 License seehttps://www.gnu.org/licenses/old-licenses/gpl-2.0.txt

If you have any bugs or feature requests,let us know.

Thanks!