Reproducible data analysis for "Inferring causal genotype-phenotype relationships for population-sampled parent-child trios" by Tang, Cabreros, and Storey

logistic factor analysis

genotype conditional association test

R package superadmixture

Reproducible data analysis for "Coancestry superposed on admixed populations yields measures of relatedness at individual-level resolution" by Danfeng Chen and John D. Storey

Transmission mean test (TMT) for genetic causal inference in families

R package to estimate kinship and FST from SNP data

R package to estimate q-values and false discovery rate quantities.

R package to model and simulate admixed populations