- Fix file argument parsing to handle list, string, and JSON formats more robustly- Clarify git repository detection and file selection logic with better separation of concerns- Add force_api_mode to handle cases where no supported manifest files are found- Replace ambiguous should_skip_scan logic with clearer file detection flow- Add create_full_scan_with_report_url method to Core for API-mode scanning- Improve logging messages and remove unused code (get_all_scores method)- Ensure consistent diff object initialization and ID handling- Automatically enable disable_blocking when no supported files are detected

…r exhaustion- Add --save-submitted-files-list option to output JSON with list of scanned files, sizes, and metadata for debugging- Add --save-manifest-tar option to create tar.gz archive of all manifest files with original directory structure- Implement lazy file loading to prevent 'Too many open files' errors when scanning large numbers of manifest files- Add system resource utilities to check file descriptor limits and warn when approaching ulimit -n- Update .gitignore to exclude AI testing files and verification scripts- Update README with comprehensive documentation for new debugging features and examples