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Graphical User Interface (GUI) Python apps written in python using qt andpyqtgrpah for quick analysis of scientific data. It also includes the ability to convert data toH5 if needed.

Python is not required to use GLabViz (seeHow to use?)

DOWNLOAD HERE

The primary users for this Python package application are Ginger Lab members at the University of Washington, Seattle but is licensed under MIT License and open for everyone to use.

• Fluorescence Lifetime Analysis

  • Analyze lifetime
  • Fit data with or without IRF
  • Fit with stretched, single, or double exponential functions by diff_ev or fmin_tnc
  • Calculate surface recombination velocity
  • Export graph and fit results

• Spectra Analysis

  • Analyze single spectrum
    • Fit with or without background and white light
    • Fit with single Lorentzian, single Gaussian, double Gaussian, triple Gaussian models
    • Export graph and fit results
  • Analyze spectra scan
    • Load spectra scan data in .h5 or .pkl files
    • Plot raw scan data
    • Plot scan intensity sums
    • Plot fitted scan by pk_pos, fwhm, sigma, or height
    • Export fitted scan
  • .pkl to .txt, .pkl to .h5 converters

• Fluorescence Lifetime Imaging Microscopy (FLIM) Data Analysis

  • Load lifetime scans in .h5 or .pkl files
  • Plot histogram intensity sums and analyze PSF
  • Export intensities array and intensities image
  • Plot raw histogram data and analyze lifetime
  • Compare lifetime in two different regions

• Photluminescence Quantum Efficiency (PLQE) Analysis

  • Plot PLQE data
  • Calculate PLQE

• UV-Vis Data Analysis

  • Plot UV-Vis data
  • Correct UV-Vis data for scattering
  • Plot Tauc data
  • Calculate bandgap
  • Export UV-Vis and Tauc plots

• GeneralH5 View and Plot

  • Load .h5 file to view file structure
  • Plot datasets as a graph or an image

• H5 and PKL File Viewer

  • Load .h5 or .pkl file to view file structure

• Image Analysis

  • Load image on SPOT or Pixera settings, or specify pixel size
  • Handle RGB and greyscale images
  • Select magnification
  • Color profile horizontally or vertically

• Under thereleases page, download the latest release of theDataBrowser zip file
• Extract the zip file and runDataBrowser.exe

git clone https://github.com/SarthakJariwala/Python_GUI_apps.git

• Install all dependencies
• Run the application by double-clicking DataBrowser.py.
• OR Run it from command-line while in the PythonGUI_apps folder:

python DataBrowser.py

• ScopeFoundry
• pyqtgraph
• numpy
• pyqt
• qtpy
• h5py
• matplotlib
• scipy
• lmfit
• customplotting

conda install numpy pyqt qtpy h5py pyqtgraphpip install ScopeFoundrypip install matplotlib scipy lmfit customplotting==0.1.4.dev0