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A web interface for querying mARC

This is a Flask app with bootstrap, jquery, and datatables (via CDN). To start with local development:

git clone https://github.com/PennChopMicrobiomeProgram/marc_web.gitcd marc_web/python -m venv env/source env/bin/activatepip install -r requirements.txtpip install -r dev-requirements.txtexport MARC_DB_URL=sqlite:////path/to/marc_web/db.sqlite && export MARC_DB_LAST_SYNC=/path/to/last_sync && flask --app app/app run --debug

You'll need to create/path/to/marc_web/db.sqlite usingmarc_db and (optionally)/path/to/last_sync with a date/time stamp.

To test the containerized version locally,

docker build -t myrepo/marc_web:dev -f Dockerfile .docker run --rm -p 8080:80 -v /path/to/marc_web/:/data -e MARC_DB_URL='sqlite:////data/db.sqlite' myrepo/marc_web:dev

myrepo can be anything for local development. If you want to push anything to DockerHub it will have to be a repo you have proper permissions for. Use the full path to themarc_web repo where specified. Once this is running, you can navigate tohttp://127.0.0.1:8080 in your browser and interact with it. The database it is using lives at/path/to/marc_web/db.sqlite.

There are a lot of options for deployment of containerized apps. If you have access to Kubernetes, it is the de facto standard for deploying containerized apps.