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adonisplus

Public

R 3 2

mirix

Public

Quantify the susceptibility of a bacterial community to an antibiotic.

R 3 1

dnabc

Public

Identify DNA barcodes in high-throughput sequencing data files

Python 6

unassigner

Public

Type strain identification for 16S reads

Python 5 5

Showing 10 of 33 repositories

marc_db Public
PennChopMicrobiomeProgram/marc_db’s past year of commit activity
Python00 0 1 UpdatedDec 17, 2025
marc_infra Public
PennChopMicrobiomeProgram/marc_infra’s past year of commit activity
Shell00 0 2 UpdatedDec 17, 2025
marc_web Public
A web interface for querying mARC
PennChopMicrobiomeProgram/marc_web’s past year of commit activity
HTML0 1 0 2 UpdatedDec 16, 2025
SampleRegistry Public
Web application to keep track of samples sequenced
PennChopMicrobiomeProgram/SampleRegistry’s past year of commit activity
Python0 3 7 4 UpdatedDec 15, 2025
marc_honest Public
Honest broker for mARC db
PennChopMicrobiomeProgram/marc_honest’s past year of commit activity
Python00 0 4 UpdatedDec 15, 2025
16S_QIIME2 Public template Forked fromjunglee0713/16S_QIIME2
Snakemake based 16S QIIME2 pipeline
PennChopMicrobiomeProgram/16S_QIIME2’s past year of commit activity
Python 1 7 0 2 UpdatedDec 9, 2025
CHOP_metadata_checker Public
PennChopMicrobiomeProgram/CHOP_metadata_checker’s past year of commit activity
HTML0 3 11 0 UpdatedDec 5, 2025
unassigner Public
Type strain identification for 16S reads
PennChopMicrobiomeProgram/unassigner’s past year of commit activity
Python 5 5 8 3 UpdatedNov 24, 2025
dnabc Public
Identify DNA barcodes in high-throughput sequencing data files
PennChopMicrobiomeProgram/dnabc’s past year of commit activity
Python0GPL-2.0 6 0 3 UpdatedNov 24, 2025
seqBackup Public
PennChopMicrobiomeProgram/seqBackup’s past year of commit activity
Python 1 5 1 3 UpdatedNov 18, 2025

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