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neuroexpresso

Public

📊 Gene expression in neuroexpresso database

R 18 1

Gemma

Public

Genomics data re-analysis

Java 23 6

markerGeneProfile

Public

Marker gene profile estimation method used in NeuroExpresso manuscript

R 14 2

Showing 10 of 68 repositories

sc-annotation-pipeline Public
PavlidisLab/sc-annotation-pipeline’s past year of commit activity
Python00 5 0 UpdatedJul 11, 2025
Gemma Public
Genomics data re-analysis
PavlidisLab/Gemma’s past year of commit activity
Java 23Apache-2.0 6 346 31 UpdatedJul 7, 2025
coex-simulation Public
A theoretical study on the detection of dynamic gene regulation in bulk tissue transcriptomes.
PavlidisLab/coex-simulation’s past year of commit activity
PostScript00 0 0 UpdatedJun 29, 2025
simulation Public
PavlidisLab/simulation’s past year of commit activity
00 0 0 UpdatedJun 29, 2025
GemBrow Public
The Gemma Browser
PavlidisLab/GemBrow’s past year of commit activity
Vue 4Apache-2.0 1 28 1 UpdatedJun 27, 2025
TGEMO Public
The Gemma Ontology
PavlidisLab/TGEMO’s past year of commit activity
Python 1 1 3 1 UpdatedJun 27, 2025
rnaseq-pipeline Public
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
PavlidisLab/rnaseq-pipeline’s past year of commit activity
Shell 24Unlicense 5 31 1 UpdatedJun 24, 2025
RSEM Public Forked fromdeweylab/RSEM
RSEM with STAR shared memory support (fork from RSEM: accurate quantification of gene and isoform expression from RNA-Seq data)
PavlidisLab/RSEM’s past year of commit activity
C++ 1GPL-3.0 125 0 0 UpdatedJun 24, 2025
gemma.R Public
An R wrapper for the Gemma RESTful API
PavlidisLab/gemma.R’s past year of commit activity
R 10Apache-2.0 1 9 0 UpdatedJun 24, 2025
gemmapy Public
PavlidisLab/gemmapy’s past year of commit activity
Python 6Apache-2.0 1 10 2 UpdatedJun 24, 2025

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