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Utilities for pre-processing emission-excitation-matrix (EEM).

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PMassicotte/eemR

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TheeemR package implements various functions used calculate metricsfrom excitation-emission matrix (EEM) as well as to preformpre-processing corrections before PARAFAC analysis.

The latest release of the package from CRAN can be installed with:

install.packages("eemR")

The latest development version of the package can be installed with:

devtools::install_github("PMassicotte/eemR")

Vignette

A detailed vignette presenting the package which can be viewed using:

vignette(topic="introduction",package="eemR")

Supported spectrophotometers

At the moment, EEMs generated by the following spectrofluorometer areofficially supported.

  • Cary Eclipse.csv files

  • Aqualog.dat files

  • Shimadzu.TXT files

  • Fluoromax-4.dat files

  • Hitachi F-7000 FL.TXT files

EEM can be read using theeem_read() function. Please fill anissue if you have otherfile formats you would like to add to the package. You can also writeyour ownimportfunction!

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Utilities for pre-processing emission-excitation-matrix (EEM).

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