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Allow the HDF5 "chunk cache" to be set fromcfdm.write#796
Workflow file for this run
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| # A GitHub Action to run the cfdm test suite after events on main. | ||
| name:Run test suite | ||
| # Triggers the workflow on push or PR events for the main branch (only) | ||
| on: | ||
| push: | ||
| branches: | ||
| -main | ||
| pull_request: | ||
| # default (from docs) is just on [opened, synchronize, reopened] | ||
| types:[opened, reopened, ready_for_review, edited] | ||
| branches: | ||
| -main | ||
| # Note a workflow can have 1+ jobs that can run sequentially or in parallel. | ||
| jobs: | ||
| run-test-suite-job: | ||
| # Set-up the build matrix. We run on different distros and Python versions. | ||
| strategy: | ||
| matrix: | ||
| os:[ubuntu-latest, ubuntu-18.04, macos-latest, macos-10.15] | ||
| # Note: keep versions quoted as strings else 3.10 taken as 3.1, etc. | ||
| python-version:["3.8", "3.9", "3.10", "3.11", "3.12"] | ||
| # Run on new and old(er) versions of the distros we support (Linux, Mac OS) | ||
| runs-on:${{ matrix.os }} | ||
| # The sequence of tasks that will be executed as part of this job: | ||
| steps: | ||
| -name:Checkout | ||
| uses:actions/checkout@v2 | ||
| # Provide a notification message | ||
| -name:Notify about setup | ||
| run:echo Now setting up the environment for the cfdm test suite... | ||
| # Prepare to run the test-suite on different versions of Python 3: | ||
| -name:Set up Python ${{ matrix.python-version }} | ||
| uses:actions/setup-python@v1 | ||
| with: | ||
| python-version:${{ matrix.python-version }} | ||
| # Setup conda, which is the simplest way to access all dependencies, | ||
| # especially as some are C-based so otherwise difficult to setup. | ||
| -name:Setup Miniconda | ||
| uses:conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| miniconda-version:"latest" | ||
| activate-environment:cfdm-latest | ||
| python-version:${{ matrix.python-version }} | ||
| channels:anaconda | ||
| # Ensure shell is configured with conda activated and pip up-to-date: | ||
| -name:Check conda config | ||
| shell:bash -l {0} | ||
| run:| | ||
| conda info | ||
| conda list | ||
| conda config --show-sources | ||
| conda config --show | ||
| pip install --upgrade pip | ||
| # Install cfdm dependencies pre-testing | ||
| # We do so with conda which was setup in a previous step. | ||
| -name:Install cfdm with its dependencies | ||
| shell:bash -l {0} | ||
| run:| | ||
| # Install dependencies required for the tests: | ||
| conda install -c anaconda libnetcdf | ||
| pip install pycodestyle | ||
| # Install Python-based deps and our dev version of cfdm to test: | ||
| pip install netCDF4 | ||
| pip install -e . | ||
| # Install the coverage library | ||
| # We do so with conda which was setup in a previous step. | ||
| -name:Install coverage | ||
| shell:bash -l {0} | ||
| run:| | ||
| conda install coverage | ||
| # Provide another notification message | ||
| -name:Notify about starting testing | ||
| run:echo Setup complete. Now starting to run the cfdm test suite... | ||
| # Finally run the test suite and generate a coverage report! | ||
| -name:Run test suite and generate a coverage report | ||
| shell:bash -l {0} | ||
| run:| | ||
| cd cfdm/test | ||
| ./run_tests_and_coverage --nohtml | ||
| # For one job only, generate a coverage report: | ||
| -name:Upload coverage report to Codecov | ||
| # Get coverage from only one job (choose with Ubuntu Python 3.9 as | ||
| # representative). Note that we could use a separate workflow | ||
| # to setup Codecov reports, but given the amount of steps required to | ||
| # install including dependencies via conda, that a separate workflow | ||
| # would have to run anyway, it is simplest to add it in this flow. | ||
| # Also, it means code coverage is only generated if the test suite is | ||
| # passing at least for that job, avoiding useless coverage reports. | ||
| uses:codecov/codecov-action@v1 | ||
| if:| | ||
Check failure on line 106 in .github/workflows/run-test-suite.yml
| ||
| matrix.os == "ubuntu-latest" && matrix.python-version == "3.9" | ||
| with: | ||
| file:./cfdm/test/cfdm_coverage_reports/coverage.xml | ||
| fail_ci_if_error:true | ||
| flags:unittests | ||
| name:codecov-umbrella | ||
| # End with a message indicating the suite has completed its run | ||
| -name:Notify about a completed run | ||
| run:| | ||
| echo The cfdm test suite run has completed. | ||