As a bioinformatician, one of my guiding questions is,"How can I use myknowledge of biological research and software development for the good ofhumanity?"

This question leads me to the following topics that I am very passionate about:

• Thinking in systems, both biological networks and software architecture.
• Designing automated solutions for and with human beings.
• Access to and transparency of knowledge as embodied by, for example, theopenscience movement or theOpen KnowledgeFoundation andWikipedia toname but a few.

You can also find me on the following platforms:

• Twitter @me_beber
• Linkedin
• Email

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1. dependency-infodependency-infoPublic

   Retrieve and print Python package dependencies.

   Python 4 3

2. metanetx-sdkmetanetx-sdkPublic

   Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.

   Python 5

3. structurizr-pythonstructurizr-pythonPublic archive

   A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.

   Python 66 16

4. fastapi-basefastapi-basePublic

   A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.

   Shell 9 2

5. opencobra/cobrapyopencobra/cobrapyPublic

   COBRApy is a package for constraint-based modeling of metabolic networks.

   Python 491 217

6. opencobra/memoteopencobra/memotePublic

   memote – the genome-scale metabolic model test suite

   HTML 131 31