Lossless compression of FASTQ sequences.
lfq 0.0.4Usage: lfq <CMD> [arguments] .. encode Encode a set of FASTQ sequences to LFQ decode Decode a LFQ to FASTQ index Generate an index file for fast seeking of LFQ view View one or more sequences in a LFQRunning lfq <CMD> without arguments prints usage information for <CMD>
lfq 0.0.4Encodes a FASTQ to LFQ formatUsage: lfq encode [options] fastq-filePositional arguments:fastq-file Input FASTQ file. Use a dash '-' to read from stdin.Options:-o, --output (required) File for LFQ output-h, --header File for read headers-q, --qual File for quality sequences-i, --index File for index output
lfq 0.0.4Decodes a LFQ file to FASTQUsage: lfq decode [options] lfq-filePositional arguments:lfq-file Input LFQ file.Options:-o, --output File for FASTQ output. Defaults to stdout.-h, --header File from which to read headers-q, --qual File from which to read quality sequences
lfq 0.0.4Builds an index for a LFQ file for fast seekingUsage: lfq index [options] lfq-filePositional arguments:lfq-file Input LFQ file.Options:-o, --output (required) File for index output.
lfq 0.0.4View read(s) in a LFQ fileUsage: build/src/lfq view [options] lfq-filePositional arguments:lfq-file Input LFQ file.Options:-r, --range (required) Range of reads to extract, in the format 'start:end' which prints reads at indices [start, end). Provide an integer to view a single read.-i, --index Index file. Recommended for fast lookup
