Leiden University Medical Center

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Leiden, The Netherlands
http://www.lumc.nl/

Popular repositoriesLoading

pytest-workflowpytest-workflowPublic
Configure workflow/pipeline tests using yaml files.
Python 68 10
kPALkPALPublic
Analysis toolkit and programming library for k-mer profiles
Python 30 6
EfDSEfDSPublic
Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.
Jupyter Notebook 28 36
fastqsplitterfastqsplitterPublic
Splits fastq files evenly
Python 19 8
ribosome-profiling-analysis-frameworkribosome-profiling-analysis-frameworkPublic
Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
PHP 12 6
dgeAnalysisdgeAnalysisPublic
R package with Shiny application for DGE analysis
R 12 5

Repositories

Showing 10 of 69 repositories

EfDS Public
Materials for Essentials for Data Science, a course of Statistics and Data Science master at Leiden University.
LUMC/EfDS’s past year of commit activity
Jupyter Notebook 28GPL-3.0 36 0 0 UpdatedMar 24, 2025
HAMLET Public
RNA-seq pipeline for AML diagnostics developed in collaboration with the LUMC Hematology department
LUMC/HAMLET’s past year of commit activity
Python 7MIT 4 1 0 UpdatedFeb 27, 2025
Argalaxy-ImmuneRepertoire Public Forked fromErasmusMC-Bioinformatics/Argalaxy-ImmuneRepertoire
Argalaxy Immune Repertoire pipeline
LUMC/Argalaxy-ImmuneRepertoire’s past year of commit activity
R 1MIT 1 0 0 UpdatedFeb 4, 2025
shm_csr Public Forked fromErasmusMC-Bioinformatics/shm_csr
Somatic hypermutation and class switch recombination pipeline
LUMC/shm_csr’s past year of commit activity
R0MIT 2 0 1 UpdatedFeb 3, 2025
rcourse Public
Using R for Data Analysis
LUMC/rcourse’s past year of commit activity
R 4GPL-3.0 1 7 0 UpdatedJan 21, 2025
barend-botje Public
Project set up for the retirement of Barend Mons.
LUMC/barend-botje’s past year of commit activity
HTML0GPL-3.00 0 0 UpdatedOct 8, 2024
pytest-workflow Public
Configure workflow/pipeline tests using yaml files.
LUMC/pytest-workflow’s past year of commit activity
Python 68AGPL-3.0 10 16 2 UpdatedAug 4, 2024
ansible-galaxy-cluster Public archive
Ansible role for installing galaxy on a node connected to a cluster.
LUMC/ansible-galaxy-cluster’s past year of commit activity
Jinja0MIT0 0 1 UpdatedJul 19, 2024
docker-galaxy-uwsgi Public
LUMC/docker-galaxy-uwsgi’s past year of commit activity
Dockerfile0MIT 1 2 0 UpdatedFeb 14, 2024
dgeAnalysis Public
R package with Shiny application for DGE analysis
LUMC/dgeAnalysis’s past year of commit activity
R 12MIT 5 0 1 UpdatedJan 8, 2024