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Parsing and data analysis with BioLector microbioreactor data.
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JuBiotech/bletl
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bletl is available throughPyPI:
pip install bletlYou can usebletl by installing it in your Python environment.
- clone it
git clone https://github.com/JuBiotech/bletl cd bletlpip install -e .to install it into your (activated!) Python environment in "editable mode"
The easiest way to contribute is to report bugs by openingIssues.
If you want to contribute, you should...
- Clone
bletl - Create a new branch
- Make changes on your feature-branch
- Open aPull Request
bletl is licensed under theGNU Affero General Public License v3.0.
When usingbletl in your work, please cite theOsthege & Tenhaef et al. (2022) paperand thecorresponding software version.
Note that the paper is a shared first co-authorship, which can be indicated by1 in the bibliography.
@article{bletlPaper,author ={Osthege$^1$, Michael and Tenhaef$^1$, Niklas and Zyla, Rebecca and Müller, Carolin and Hemmerich, Johannes and Wiechert, Wolfgang and Noack, Stephan and Oldiges, Marco},title ={bletl - A Python package for integrating {B}io{L}ector microcultivation devices in the {D}esign-{B}uild-{T}est-{L}earn cycle},journal ={Engineering in Life Sciences},volume ={22},number ={3-4},pages ={242-259},keywords ={BioLector, feature extraction, growth rate, microbial phenotyping, uncertainty quantification},doi ={https://doi.org/10.1002/elsc.202100108},url ={https://onlinelibrary.wiley.com/doi/abs/10.1002/elsc.202100108},eprint ={https://onlinelibrary.wiley.com/doi/pdf/10.1002/elsc.202100108},year ={2022}}@software{bletl,author ={Michael Osthege and Niklas Tenhaef and Laura Helleckes and Carolin Müller},title ={JuBiotech/bletl: v1.1.0},month = feb,year =2022,publisher ={Zenodo},version ={v1.1.0},doi ={10.5281/zenodo.6284777},url ={https://doi.org/10.5281/zenodo.6284777}}
Head over to Zenodo togenerate a BibTeX citation for the latest release.
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Parsing and data analysis with BioLector microbioreactor data.