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EXAREME

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HBPMedical/exareme

 
 

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Building Exareme

  • requires :

    • git, jdk 1.7, maven
  • open new terminal and execute

        git clone https://github.com/madgik/exareme.git -b mip exareme-src    cd exareme-src    mvn clean install -DskipTests -Pmultiarch    mv exareme-distribution/target/*.tar.gz ~/

Single node installation

  • Package dependencies :

  • Download mip-algorithms

    cd ~/wget https://github.com/madgik/mip-algorithms/archive/master.zipunzip master.zip
  • Configuration under ~/mip-algorithms-master/

    • edit properties.json
      • specify rawdb address, port, credentials, query
  • Extract Exareme tarball

    mdkir ~/exaremetar xf exareme.tar.gz -C ~/~exaremecd ~/exareme
  • Configuration under ~/exareme/

    • Specify master/worker nodes

      echo $(hostname --ip-address) > etc/exareme/masterecho "" > etc/exareme/workers
    • Edit the etc/exareme/exareme-env.sh and specify java, python installation (if needed).

    • Edit the etc/exareme/gateway.properties

      • specify the mip-algorihtms path (e.g.
      • specify the gateway port (if needed).
  • Start/Stop Exareme and check the logs

    cd ~/exareme./bin/exareme-admin.sh --start --localtail -f /tmp/exareme/var/log/exareme-master.log./bin/exareme-admin.sh --kill --local

Cluster installation

  • Set up ssh password-less access from master node to all nodes.

  • Install and configure mip-algorithms on each node.

  • On master node install Exareme based on single node instructions.

    cd ~/exareme./bin/exareme-admin.sh --install./bin/exareme-admin.sh --start./bin/exareme-admin.sh --kill
  • In order to update configuration files accross nodes

    ./bin/exareme-admin.sh --update

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  • Java49.0%
  • Python34.1%
  • JavaScript14.7%
  • HTML1.9%
  • Shell0.2%
  • CSS0.1%

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