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1. VerifyBamIDVerifyBamIDPublic

   VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

   mupad 96 15

2. YHapYHapPublic

   A population model for probabilistic assignment of Y haplogroups from sequencing data and chip data

   Perl 1 1

3. FASTQuickFASTQuickPublic

   Ultra Fast NGS Data QC Tool

   C++ 27 4

4. popsclepopsclePublic

   (NOTE: This is a development fork, please refer to official repo at statgen: https://github.com/statgen/popscle) Freemuxlet methods and auxilary tools

   C++ 1