MilaGraph

Research group led by Prof. Jian Tang at Mila-Quebec AI Institute (https://mila.quebec/) focusing on graph representation learning and graph neural networks.

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torchdrugtorchdrugPublic
A powerful and flexible machine learning platform for drug discovery
Python 1.6k 215
ULTRAULTRAPublic
A foundation model for knowledge graph reasoning
Python 583 81
GMNNGMNNPublic
Graph Markov Neural Networks
Python 410 101
GearNetGearNetPublic
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Python 309 32
NBFNetNBFNetPublic
Official implementation of Neural Bellman-Ford Networks (NeurIPS 2021)
Python 228 31
ConfGFConfGFPublic
Implementation of Learning Gradient Fields for Molecular Conformation Generation (ICML 2021).
Python 171 38

Repositories

Showing 10 of 52 repositories

MATH60629A_2025A Public Forked fromdenafiroozi/Machine-Learning-I
DeepGraphLearning/MATH60629A_2025A’s past year of commit activity
Jupyter Notebook0 1 0 0 UpdatedNov 28, 2025
Math80648A_2025A Public Forked fromAndyJZhao/Math60630A_2024A
DeepGraphLearning/Math80648A_2025A’s past year of commit activity
SCSS0 2 0 0 UpdatedNov 28, 2025
HAX Public
Overcoming Long-Context Limitations of State-Space Models via Context-Dependent Sparse Attention (NeurIPS 2025)
DeepGraphLearning/HAX’s past year of commit activity
Python 110 0 0 UpdatedSep 30, 2025
GearNet Public
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
DeepGraphLearning/GearNet’s past year of commit activity
Python 309MIT 32 24 1 UpdatedJun 13, 2025
GearBind Public
Pretrainable geometric graph neural network for antibody affinity maturation
DeepGraphLearning/GearBind’s past year of commit activity
Python 70Apache-2.0 9 8 0 UpdatedMar 18, 2025
scCello Public
[NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model
DeepGraphLearning/scCello’s past year of commit activity
Python 21 5 1 1 UpdatedMar 12, 2025
ProteinTutorial_AAAI2025 Public
https://deepgraphlearning.github.io/ProteinTutorial_AAAI2025/
DeepGraphLearning/ProteinTutorial_AAAI2025’s past year of commit activity
CSS 6MIT0 0 0 UpdatedFeb 27, 2025
ULTRA Public
A foundation model for knowledge graph reasoning
DeepGraphLearning/ULTRA’s past year of commit activity
Python 583MIT 81 3 0 UpdatedFeb 3, 2025
GraphAny Public
GraphAny: Fully-inductive Node Classification on Arbitrary Graphs
DeepGraphLearning/GraphAny’s past year of commit activity
Python 149MIT 16 2 1 UpdatedFeb 3, 2025
S3F Public
Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
DeepGraphLearning/S3F’s past year of commit activity
Python 47MIT 4 4 0 UpdatedDec 3, 2024