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@DecodeGenetics

DecodeGenetics

Popular repositoriesLoading

  1. graphtypergraphtyperPublic

    Population-scale genotyping using pangenome graphs

    C++ 179 20

  2. RatatoskRatatoskPublic

    Hybrid error correction of long reads using colored de Bruijn graphs

    C++ 100 7

  3. svimmersvimmerPublic

    Structural variant merging tool

    Python 49 9

  4. BamHashBamHashPublic

    C++ 37 8

  5. popSTRpopSTRPublic

    PopSTR - A Population based microsatellite genotyper

    C++ 32 9

  6. LRS_SV_setsLRS_SV_setsPublic

    VCF files of SVs using long-read sequencing (LRS).

    22 2

Repositories

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Showing 10 of 31 repositories
  • weaver Public

    Short read pangenome reference mapper

    DecodeGenetics/weaver’s past year of commit activity
    00 0 0 UpdatedMar 13, 2025
  • nf-weaver Public

    Nextflow workflows for mapping reads with weaver

    DecodeGenetics/nf-weaver’s past year of commit activity
    Nextflow00 0 0 UpdatedMar 11, 2025
  • graphtyper Public

    Population-scale genotyping using pangenome graphs

    DecodeGenetics/graphtyper’s past year of commit activity
    C++ 179MIT 20 66 0 UpdatedJan 9, 2025
  • gnonadd Public
    DecodeGenetics/gnonadd’s past year of commit activity
    R 10 0 0 UpdatedDec 18, 2024
  • PalssonEtAl_Nature_2024 Public

    Supplementary data for Nature publication: Complete human recombination maps

    DecodeGenetics/PalssonEtAl_Nature_2024’s past year of commit activity
    00 0 0 UpdatedNov 1, 2024
  • Ratatosk Public

    Hybrid error correction of long reads using colored de Bruijn graphs

    DecodeGenetics/Ratatosk’s past year of commit activity
    C++ 100BSD-2-Clause 7 1 0 UpdatedSep 27, 2024
  • svimmer Public

    Structural variant merging tool

    DecodeGenetics/svimmer’s past year of commit activity
    Python 49 9 5 1 UpdatedAug 23, 2024
  • DecodeGenetics/Stefanssonetal-Nature-Genetics-2024’s past year of commit activity
    R 2MIT0 1 0 UpdatedJun 19, 2024
  • Emblask Public

    Dual assembly pipeline for ONT and Illumina reads

    DecodeGenetics/Emblask’s past year of commit activity
    Nextflow00 0 0 UpdatedMar 6, 2024
  • popSTR Public

    PopSTR - A Population based microsatellite genotyper

    DecodeGenetics/popSTR’s past year of commit activity
    C++ 32GPL-3.0 9 5 0 UpdatedOct 23, 2023

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